Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2111 ATGGACGATCGGATCCCGACGGTTCTACCCCTAGCGGACCCCCCACCATCTAGCACTCAGGAAGAAAACCCCCCGCCGCCTCCTGTTGAATCTTTGTCGGCGGTGGCTGATTCTCCTATTCTAAACGAGAAGGAGTCCGTTTCACCATCAGAAGCTGTTCTGGAGTCTGTACCTTTCACTACTGCTGAAAACGAACTGGTTTTGTTACCTCCTCCGGCAACAGTGGTGGAGAAAGAAGAGCCACTGCAGCCACCACCTCGATCAATAGAACTTGACTCTGTTGCTGTTGAATCTACTAAATACAATGCAATCGAGGAGCAGAAGATTCCTCAGACTTCGGTTTCTTTCAAGGAAGAAAGTAACAGAGTGGCTGATCTTGCAGATTTGGAGAGGAAAGCTCTTCAGGAGCTCAGGCAACTCGTTGAAGAAGGTACGAAGAACCATGCATTCCAATTTGAAACCACGCCTCCCAGTCCACCAGCAGAAAATTCCAAACTTGAGGAAAATCGAGAAAAGGAAGTCCAGGAAGCAGCTCAAACTTCAAGTTTGCCAGAGAAGAAGCTGTCAATTTGGGGGGTTCCTCTTCTTGAAGATGACAGGACGGATGTGATCCTGCTGAAGTTTTTAAGGGCCAGGGACTTCAAAGTGAGGGATGCATTCCTTATGTTTCGAAACACAATTCGGTGGAGGGAGGAGTTTGGTATCGACTCACTTAAGGTGGTATATATGCATGGTTACAGCAGGGAGAGCCATCCAGTGTGTTACAATGTCTTCGGAGAGTTCCAGAACAAGGATTTATATTCAAAGATATTCTCCGACGAGGAAAAGCGGAACAAGTTTTTGCGTTGGAGGATTCAGTTCCTAGAAAGGAGTATTAGGAAACTTGATTTTCGTCCTGGAGGTATTTCTACTATGTTTCAGGTTAATGACCTCAAAAACTCCCCTGGCCCTGGTAAGCGAGAGCTTCGACTGGCCACCAAACAGGCAGTACAGGTGCTTCAGGACAATTATCCTGAATTCGTAGCCAAACAGGTATTTATCAACGTCCCTTGGTGGTATCTTGTATTTTATACGATGATCGGCCCATTTCTAACACAGAGGTCCAAAAGCAAATTTATCTTCGCGGGCCCTTCAAAATCTGCCGAGACCCTATTCAAGTACATTTCTCCTGAACAAGTTCCAATCGAATATGGTGGTTTGAGCATTGATCATTGTGATTGCAACCCAGATTTCGATGCTTCTGATCAAGCAACGGAAGTCTCGATTAAACCATCAACTAAGCAAACTGTTGAAATTATAATTTATGAGAAGTGCATTATTGCTTGGGAGCTACGTGTTGTGGGATGGGAGGTGAGCTACAGTGCTGAATTTGTGCCTAATAACGAAGAAGCATATACTGTGATAATACAAAAGACAAGAAAAATGGCTGCAACGGACGAACCAGTCATCTCTCACAGTTTCCAAGTCTTTGAATTGGGAAAGGTGTTATTTACTATTGACAATCCAACCTCCAAGAAGAAGAAGCTCATGTATAGGTTCAAGGTCAAGGTTCTAAGAGACTGA 1563 44.72 MDDRIPTVLPLADPPPSSTQEENPPPPPVESLSAVADSPILNEKESVSPSEAVLESVPFTTAENELVLLPPPATVVEKEEPLQPPPRSIELDSVAVESTKYNAIEEQKIPQTSVSFKEESNRVADLADLERKALQELRQLVEEGTKNHAFQFETTPPSPPAENSKLEENREKEVQEAAQTSSLPEKKLSIWGVPLLEDDRTDVILLKFLRARDFKVRDAFLMFRNTIRWREEFGIDSLKVVYMHGYSRESHPVCYNVFGEFQNKDLYSKIFSDEEKRNKFLRWRIQFLERSIRKLDFRPGGISTMFQVNDLKNSPGPGKRELRLATKQAVQVLQDNYPEFVAKQVFINVPWWYLVFYTMIGPFLTQRSKSKFIFAGPSKSAETLFKYISPEQVPIEYGGLSIDHCDCNPDFDASDQATEVSIKPSTKQTVEIIIYEKCIIAWELRVVGWEVSYSAEFVPNNEEAYTVIIQKTRKMAATDEPVISHSFQVFELGKVLFTIDNPTSKKKKLMYRFKVKVLRD 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26490317 26496956 - PI0022355.1 Cmetu03g2111 352255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2111 520 FunFam SEC14 cytosolic factor family protein 235 415 - -
Cmetu03g2111 520 PRINTS Cellular retinaldehyde-binding protein signature 204 226 - -
Cmetu03g2111 520 PRINTS Cellular retinaldehyde-binding protein signature 357 376 - -
Cmetu03g2111 520 ProSiteProfiles GOLD domain profile. 415 515 IPR009038 -
Cmetu03g2111 520 SMART CRAL_TRIO_N_2 201 226 IPR011074 -
Cmetu03g2111 520 SUPERFAMILY CRAL/TRIO N-terminal domain 116 238 IPR036273 -
Cmetu03g2111 520 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 231 405 IPR001251 -
Cmetu03g2111 520 MobiDBLite consensus disorder prediction 147 167 - -
Cmetu03g2111 520 Gene3D - 152 228 - -
Cmetu03g2111 520 SMART sec14_4 234 402 IPR001251 -
Cmetu03g2111 520 MobiDBLite consensus disorder prediction 1 51 - -
Cmetu03g2111 520 MobiDBLite consensus disorder prediction 9 32 - -
Cmetu03g2111 520 MobiDBLite consensus disorder prediction 148 162 - -
Cmetu03g2111 520 Coils Coil 123 143 - -
Cmetu03g2111 520 Pfam CRAL/TRIO, N-terminal domain 172 225 IPR011074 -
Cmetu03g2111 520 PANTHER PATELLIN-1 93 516 IPR044834 GO:0008289
Cmetu03g2111 520 Pfam CRAL/TRIO domain 239 399 IPR001251 -
Cmetu03g2111 520 Gene3D GOLD domain 418 517 - -
Cmetu03g2111 520 CDD SEC14 236 400 IPR001251 -
Cmetu03g2111 520 SUPERFAMILY CRAL/TRIO domain 239 401 IPR036865 -
Cmetu03g2111 520 Gene3D - 229 417 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2111 Cmetu-Chr3:26490317 Cmetu09g1378 Cmetu-Chr9:21807953 7.40E-126 dispersed
Cmetu03g2111 Cmetu-Chr3:26490317 Cmetu08g0311 Cmetu-Chr8:2756419 1.00E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed11g1710 . . . . . . . . Bhi06g00290 Tan10g2120 Cmetu03g2111 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000709 2 3 3 2 2 3 4 3 3 3 3 3 4 2 3 4 3 7 4 3 3 3 4 3 3 3 3 3 3 4 96