Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2117 ATGGATGATTACCCTAGTAAAAGAGTTGCTGATGGATATACATCCAGAAGGGGACCCAGTGCAGTTTTGAGAGATACTGCAAATAGCAGAGACCAAGACGGTAAATATTGTAGCCGAATTGGTTGCAGTGGTAGGCTAAACTCTCCAAAGAGCACACGGGGTAGCTATTCAGAGAAACATAAATCTCCATTGCAGTCTTTCCGTACCTCCTCAAGTGGCAAAGAAACAGCCGGAAGTTCCTCTAAGACTTACTATGCTGTTCGAGGTTCCAAGAAGTCCGTAGCTGAAACACAGAGAAAACTATCCACCCAGTTAGAAACAGACTCTTCAGAAACTAGTAGCACTCAGGATGATCCAGAGATTTCTCAGGTCGTCCCATCAAATCAGATACGAACTGGTCTTCACGTTGGTCTTAAAAGTTCCAACTCCACTGATGACACAATGGTGGAACCAGGAAGCTCCAGTGTCGCATCAAACACAAAAGGGCGAAGGGATTTCAATCAAAGATCTGGAACACGTAATAAAGACACTCCAGCAACTTCTTCTGTGTTGACAGGTTCTAAAAGTACTCGCCCGACAGCACGTGGTGGTGCAGGTAGGCAAACCTTGAGAAATTTCAGATGTAATTCAATATCTGATGTCATCTCATCTGGTTGTTCTTCATCAGATGCAAATCCTAGTAAACGGAAGGATACAGCAAAAAAAAGGAATCCTGAAGCAGAAAGTAGCTCTACAAAAGGAAAGAAAATGAATGGGTCATCCTTGGAAAGAAGGATTAATAGCTCTGGTTATGGCGTTTCTATATCTGATTCAAGGGGAGCCAAAAAAGGAACTTCTAACAGAGAAAATGGCATCACTTCAGGTCGGTCCAGGACATTGAATAATGGGACATCAAGAGCAAGAACACATGGCAACAGACCTGACAGAAACAGTACATCTTTGCATGAGTCGCGGTCCATGATCTCTCAGGTGTCGCAAGACCATCAACCCGACAGCTCTATAGATAATATTACACATGAAGTATCTACCGAGTTGATTCCAGACCACCCAATTTCTTACAGAAGGTCAGATAGTATGAATGAGAATATACTTAGTCATAGACCTGCTAGTCCCGCAGACATTGGATTGGCTCGCTCTTTAACAACTCGAGATAGCTTTCGACACTATGGTATTGCTGAGGTATTACTGGCACTTGAAAGGATTGAACATGAAGAAGAGCTAACATATGAGCAAGTAATTCTTTTAGAGACCAACCTTTTCCTCAGTGGCTTAAACTTCTATGATCAGCATAGAGACATGAGGCTGGATATTGATAACATGTCATATGAGGAATTACTCGCTCTAGAAGAGAGAATGGGAACTGTGAGTACAGCAGTTACTGAGGAAGCATTGTCACAATGCTTGAACAGAAGCACGTATCAGTCTAGATATGCAGAGGATACATCTGCTGGTGGCAGCGAGTATGAGGATGGTGTCAAATGTTGTATCTGCCAGGAGGAGTACTCGAATGGAGATGAAGTCGGGACGCTGCAGTGTGAGCATACTTACCATGAAGGGTGCATACAACAGTGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA 1644 43.73 MDDYPSKRVADGYTSRRGPSAVLRDTANSRDQDGKYCSRIGCSGRLNSPKSTRGSYSEKHKSPLQSFRTSSSGKETAGSSSKTYYAVRGSKKSVAETQRKLSTQLETDSSETSSTQDDPEISQVVPSNQIRTGLHVGLKSSNSTDDTMVEPGSSSVASNTKGRRDFNQRSGTRNKDTPATSSVLTGSKSTRPTARGGAGRQTLRNFRCNSISDVISSGCSSSDANPSKRKDTAKKRNPEAESSSTKGKKMNGSSLERRINSSGYGVSISDSRGAKKGTSNRENGITSGRSRTLNNGTSRARTHGNRPDRNSTSLHESRSMISQVSQDHQPDSSIDNITHEVSTELIPDHPISYRRSDSMNENILSHRPASPADIGLARSLTTRDSFRHYGIAEVLLALERIEHEEELTYEQVILLETNLFLSGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEALSQCLNRSTYQSRYAEDTSAGGSEYEDGVKCCICQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3806861 3812083 + PI0002346.1 Cmetu03g2117 352261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2117 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 545 IPR013083 -
Cmetu03g2117 547 SMART ring_2 494 534 IPR001841 -
Cmetu03g2117 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 538 IPR045191 GO:0061630
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 44 87 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 244 301 - -
Cmetu03g2117 547 SUPERFAMILY RING/U-box 493 541 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 96 165 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 314 334 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 1 334 - -
Cmetu03g2117 547 Pfam Ring finger domain 493 535 IPR001841 -
Cmetu03g2117 547 FunFam E3 ubiquitin-protein ligase arkadia 456 540 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 203 226 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 227 243 - -
Cmetu03g2117 547 MobiDBLite consensus disorder prediction 172 196 - -
Cmetu03g2117 547 ProSiteProfiles Zinc finger RING-type profile. 494 535 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2117 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0821 Cmetu-Chr3:1228197 Cmetu03g2117 Cmetu-Chr3:3806861 1.10E-31 dispersed
Cmetu03g2117 Cmetu-Chr3:3806861 Cmetu12g0895 Cmetu-Chr12:1404540 4.60E-25 dispersed
Cmetu03g0877 Cmetu-Chr3:12253596 Cmetu03g2117 Cmetu-Chr3:3806861 3.10E-17 transposed
Cmetu07g0060 Cmetu-Chr7:8023825 Cmetu03g2117 Cmetu-Chr3:3806861 1.90E-26 transposed
Cmetu07g0307 Cmetu-Chr7:21759111 Cmetu03g2117 Cmetu-Chr3:3806861 8.20E-24 transposed
Cmetu03g2117 Cmetu-Chr3:3806861 Cmetu04g1265 Cmetu-Chr4:30677909 6.20E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97