Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2126 ATGGGTTTCTTCCGATTTCCAAATTCGATACTTGTTGTTGTTGTTTTTGGCATGATGAATCTGTTCAATTTAGGGTTTGGAGCAAGAAAGCTTGCATCTTTGTATGAAGCACCAACAATGGCCATCCGTTACCACAATGGGGCTTTGCTTCAAGGAAATGTTCCTGTTTCCATCTTGTGGTATGGCAAATTTACTGCCCCTCAGAAAGCCATTGTTCTTGATTTTCTGCTCTCTCTCAATTCTCGTTCAGAGGAGCCCGACGGTGTCGCTCCATCGGTCTCTCGTTGGTGGAATACCATTCAGGTTTATATGAAAAGAGCCGGAAAAAAAGACGCAAAGGTTATTTTAGCGAAACAAATAACAGACGATAAATACTCCATCGGAAAATTCTTTAAAAAAACCCAAATTTCAGAACTGTCACGGAGGGCCGGCTCAAAATACGGCGGCTTGACACTGGTTCTCACGGCGGAGGACGTTACCGTCGAAGGGTTTTGCATGAGTTCCTGCGGGTTTCACAATTGGGACCACAAATCGAAATCGGCCTTCATATGGGTCGGCAACTCGGTGAGTCAGTGTCCGGGTCAATGTGCTTGGCCGTTCCACCAGCCCATCTACGGCCCACAAACGCCGCCGCTCCTACCGCCTAACGCCGACGTCGGAATTGACGGCATGATAATCAACATCGCCACTCTTTTAGCTGGAACCGCCACCAATCCCTTCGGTAACGGCTACTTCCTCGGCCCGCCAGCGGCGCCGCTGGAGGCGGCGACGGCCTGTCCCGGGGTATACGGGAACGGGGCTTATCCAGGATACACCGGTAAGCTGCTGAAGGACGACACCACCGGCGGGAGCTATAATGCCGCCGGCGTCGGCACCAGAAAGTATCTTTTGCCGGCGTTGTACGATCCCGTAACTTCTCGTTGTTCAACACTGGTTTGA 939 50.91 MGFFRFPNSILVVVVFGMMNLFNLGFGARKLASLYEAPTMAIRYHNGALLQGNVPVSILWYGKFTAPQKAIVLDFLLSLNSRSEEPDGVAPSVSRWWNTIQVYMKRAGKKDAKVILAKQITDDKYSIGKFFKKTQISELSRRAGSKYGGLTLVLTAEDVTVEGFCMSSCGFHNWDHKSKSAFIWVGNSVSQCPGQCAWPFHQPIYGPQTPPLLPPNADVGIDGMIINIATLLAGTATNPFGNGYFLGPPAAPLEAATACPGVYGNGAYPGYTGKLLKDDTTGGSYNAAGVGTRKYLLPALYDPVTSRCSTLV 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2530561 2532376 - PI0014225.1 Cmetu03g2126 352270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2126 312 PANTHER PROTEIN EXORDIUM-LIKE 5 18 312 IPR006766 -
Cmetu03g2126 312 Pfam Phosphate-induced protein 1 conserved region 43 311 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2126 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2126 Cmetu-Chr3:2530561 Cmetu04g0771 Cmetu-Chr4:31179589 5.90E-86 dispersed
Cmetu03g2126 Cmetu-Chr3:2530561 Cmetu03g1100 Cmetu-Chr3:2543743 1.20E-91 proximal
Cmetu07g0101 Cmetu-Chr7:10397136 Cmetu03g2126 Cmetu-Chr3:2530561 8.30E-79 transposed
Cmetu03g2126 Cmetu-Chr3:2530561 Cmetu04g2098 Cmetu-Chr4:31174592 2.10E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g424 . . Bda01g00889 . Bpe02g00113 . . . Cmo05g00530 . . . Car01g01230 Car12g00150 Sed04g0148 . Cpe07g00138 Bhi04g00770 Tan02g2401 Cmetu03g2126 . Hepe10g0490 . Lcy13g1554 Cla08g01116 Cam08g1572 Cec08g1142 Cco08g1269 Clacu08g1273 . Cre08g1054 . . . . Lsi04g02241 Csa03g04452 . . . . Bda11g00770 . Bpe02g01125 Bpe14g00457 . . . Cmo01g01658 . . Cma05g00504 Car05g00453 . Cpe11g00443 . Bhi09g02444 Tan01g3796 . . Hepe01g2133 . . . . . . . . . Lsi08g00972 Csa02g02156 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011849 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30