Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2145 ATGGTGAATTCCGTGGTGGCGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCGATGAACATCGAGATCTGTGATATGTTGAACCATGACCCTGGGCAAGCGAAAGATGTCGTTAAAGGTATAAAGAAACGCCTTGGAAGCAAGAACGCAAAAGTTCAATTTCTTGCCCTGACGCTTTTGGAAACAATCATTAAGAATTGTGGGGACATTGTTCATATGCATGTGGCAGAGAAGGGTCTTCTTCATGAGATGGTAAAAATGGTGAAGAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATACTGATTCTAATAGATACTTGGCAAGAAGCTTTTGGAGGACCTAGGGCAAGATATCCACAATATTATGCTGCGTACCAGGAATTGTTGCGTGCTGGGGCAGTTTTCCCCCAGAGATCTGAGAGCTCTGCACCTGTATTCACCCCCCCACAAACACAACCTTTGGCATCATATCCTCCTAATCTACGGAATCCTGATCGTAATCAGCAAGATGGTGCTGAAACCTCTGCTGAGTCCGAGTTTCCGACCTTAAGCCTGACTGAAATTCAAAATGCTCGTGGAATTATGGACGTTCTTTCAGAAATGCTTAATGCATTAGAACCAGGGAATAAAGAGGCTATCAGACAGGAAGTTATTGTTGACTTGGTTGACCAGTGCCGTACTTACAAGCAGAGGGTGGTTCACCTTGTTAACTCAACTGCGGATGAGTCATTACTTTGCCAAGGACTTGCACTTAATGATGATCTTCAGAGGCTACTTGCTAGGCATGAATCTATTTCTTCTGGAAATCCTGTTGTTCAGAAACCAAAGTCTGAATCTGCTACGACACTCGTTGATGTAGACCGGCCCCTTATTGACACTGGAGATAACAGCAAACAGCCTGAGACAAATGCTGCTGCCTCAAATGCCGGTGAAGGTTCTCAAACCCTGAACCAGTTGTTGCTTCCCGCACCTGTCGCAGCTAATGGACCAGCTCCTCCAGGTAGAGTTGAACCCAATGTCGACCTGCTGAGTGGTGACTTCAATTCACCAAAGGCAGAGACTTCGTTGGCTCTTGTTCCTCTTGGAGAACAACAGCAACAACCTAATCCTCCTGCATCGGATCAAAATGCTCTTGTTCTATTTGACATGTTCTCTGATAGTAACAATGCCTCTAATCCTGCAAATCCCCCTCCTATCAATCCCGTTGCGCAACCCCTGCACCCACATGGTTCTCAATTGCAACAGCAACAGCAGCAGCAGCAACCTAATGTTCATTCCCCTCAAGCTGGATTGTATCCAAATGGGAACGTCATGAACATGGGTTCACCTAATTATGAGCAATCGATGTACATGCAGGGCGCTGGTTCTGCCTGGAATGGTCAAACTCCTCCTCAGCAGCAACAGCAGCCCCATTCACCTGGCTATGGTTCGCAAACTGGTTCATTACCACCTCCGCCCTGGGAAGCTCAGTCCTCTGATGATGGCAGCCCAGTGGCTGGCTCTCATTACTCTCAACCAATGCAGGTTACTACTCAGGTTATTGTCTCACACGGACTTGGTGGACATCCCCAGGGACCTCAATCAATGGGGAACGAGGTTGTAGGTATAGGTATGTACATCCAGCCGATAACGAGTGGTCAAATGTCTAACATCAATAGCCATGTTAATCCAAACCATCAGTTGGGTATGCCGATGCCTCCGCAGCAGATCCCAGGCATGCAAAATATGGGTATGTCAATGCCTCCGCAACATCCACAAGCTAACCAGATGACACAACAATATTACCCTCAACAAATGTATGGCAACCACAACCAATACAACCCTGGCTATGGATATGGTCATGGTCAACCGCAAATGCCCCAATATCTTGAGCAGCAAATGTATGGCCTGTCCGTTAGAGATGATATGAGTATGAGCAATTCGTCTTCTCAAACTTCTGCTCTATCTTATGTGTCTCCCATGAAGCCAGTTAATAAACCAGAGGACAAACTGTTCGGTGACCTTGTGGACATTGCGAAATTCAAACCCGCGAAATCCACTCCTGGCAGAGCTGGTAGCATGTGA 2070 46.76 MVNSVVARATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRLGSKNAKVQFLALTLLETIIKNCGDIVHMHVAEKGLLHEMVKMVKKKPDFRVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSESSAPVFTPPQTQPLASYPPNLRNPDRNQQDGAETSAESEFPTLSLTEIQNARGIMDVLSEMLNALEPGNKEAIRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHESISSGNPVVQKPKSESATTLVDVDRPLIDTGDNSKQPETNAAASNAGEGSQTLNQLLLPAPVAANGPAPPGRVEPNVDLLSGDFNSPKAETSLALVPLGEQQQQPNPPASDQNALVLFDMFSDSNNASNPANPPPINPVAQPLHPHGSQLQQQQQQQQPNVHSPQAGLYPNGNVMNMGSPNYEQSMYMQGAGSAWNGQTPPQQQQQPHSPGYGSQTGSLPPPPWEAQSSDDGSPVAGSHYSQPMQVTTQVIVSHGLGGHPQGPQSMGNEVVGIGMYIQPITSGQMSNINSHVNPNHQLGMPMPPQQIPGMQNMGMSMPPQHPQANQMTQQYYPQQMYGNHNQYNPGYGYGHGQPQMPQYLEQQMYGLSVRDDMSMSNSSSQTSALSYVSPMKPVNKPEDKLFGDLVDIAKFKPAKSTPGRAGSM 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3532260 3538772 - PI0002316.1 Cmetu03g2145 352289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 409 488 - -
Cmetu03g2145 689 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Cmetu03g2145 689 FunFam TOM1-like protein 2 183 273 - -
Cmetu03g2145 689 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Cmetu03g2145 689 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cmetu03g2145 689 PANTHER TOM1-LIKE PROTEIN 1 683 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cmetu03g2145 689 SUPERFAMILY GAT-like domain 140 271 - -
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 268 313 - -
Cmetu03g2145 689 Gene3D - 1 148 IPR008942 -
Cmetu03g2145 689 FunFam TOM1-like protein 2 1 148 - -
Cmetu03g2145 689 CDD VHS 2 132 - -
Cmetu03g2145 689 ProSiteProfiles GAT domain profile. 181 269 IPR004152 GO:0035091|GO:0043130
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 142 184 - -
Cmetu03g2145 689 Gene3D - 184 273 IPR038425 -
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 326 350 - -
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 297 313 - -
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 268 282 - -
Cmetu03g2145 689 Pfam GAT domain 195 269 IPR004152 GO:0035091|GO:0043130
Cmetu03g2145 689 CDD GAT_GGA-like_plant 189 267 - -
Cmetu03g2145 689 MobiDBLite consensus disorder prediction 387 505 - -
Cmetu03g2145 689 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2145 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1378 Cmetu-Chr1:9043913 Cmetu03g2145 Cmetu-Chr3:3532260 1.80E-89 dispersed
Cmetu03g0224 Cmetu-Chr3:10556077 Cmetu03g2145 Cmetu-Chr3:3532260 1.10E-75 dispersed
Cmetu03g2145 Cmetu-Chr3:3532260 Cmetu08g0985 Cmetu-Chr8:1462827 8.50E-53 dispersed
Cmetu08g0220 Cmetu-Chr8:23191170 Cmetu03g2145 Cmetu-Chr3:3532260 1.20E-73 transposed
Cmetu03g2145 Cmetu-Chr3:3532260 Cmetu04g1874 Cmetu-Chr4:32153073 8.50E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45