Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2197 ATGTCTCAGACCAACTGGGAAGCTGATAAAATGTTAGATGTTTATATTCACGATTATTTGGTAAAAAGAGATTTGAAGGCTACTGCTCAGGCTTTTCAAGCAGAGGGAAAAGTCTCTTCGGATCCTGTGGCTATTGATGCGCCTGGGGGCTTTCTGTTTGAATGGTGGTCGGTATTCTGGGATATATTCATTGCCAGGACTAATGAGAAGCACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCAAGAGAGCAACAACAACATCAACAACAGCAGCAGCAGCAAACACAGCCACAACAACAACAACCACAGCACATGCAGATGCTTCTGATGCAGAGACATGCCCAACAACAGCAGCAGCAACAACAGCAGCAACAGCATCAACAGCAACAGCAGCCACAGCAGCAGCAACAGCAGACTCAGCAGCAACAACAACAGCGAAGAGATGGAGCCCAACTCTTAAATGGACCTTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGCCAGAATCCCGGATCTGTAAATGCGTTGGCTACAAAAATGTACGAGGACAGATTAAAACTGCCCCTTCAGAGGGATTCCCTAGATGATGCTGCTTTGAAACAAAGGTATGGGGATAATGTTGGGCAGCTGTTGGACCCAAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACATGGTTCAACTGGTGGAATGTCTCCTCAAGTTCAATCTAGGAACCAGCAATTGCCAGGTTCCACACCGGATATAAAGACTGAGATCAACCCAGTTTTGAATCCTAGAGCTGCAGGACCCGAGGGATCACTGATGGGCATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGGCTAGACCAGCTACGTTCTGGGATCCTTCAGCAACAAAAACCTTTCATACAGGCTCCCCAATCTTTTCCTCAGCTCCAGATGTTGACACCGCAACACCAACAACAACTAATGCTCGCACAACAGAATTTAACATCACCTTCTGTTAATGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGGCAAAAGATGGACTTTCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCTTGCCTCGTGGAGACAACACAGACGTGATCCTTAAGATAAAAATGGCTCAATTGCAGCAGCAACAACAGCAGCAACAGAGTAGTAACCAGCAACAGCAGCAGCAGCAACTTCAGCAGCATGCTCTTTCAAACCAACAATCACAAAGCTCAAACCACAATATGCACCAGCAAGAAAAAATTGGGGGCGCTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATTTCGTGGAAATGATCAGGTTTCAAAGAATCAGACTGGGAGAAAGAGGAAGCAACCGGTATCATCTTCAGGTCCAGCAAATAGCTCAGGAACTGCAAATACTGCTGGCCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGCAGTTCATCTAAACCTTTGATGATGTTCAGCAGTGACGGTACTGGCACTTTTACGTCCCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTACGTGGAGGATGGGTCTCTTGATGACAATGTCGAGTCTTTTTTATCCCATGATGATGGGGACCCTAGAGATCCTGTAGGGCGCTGTATGGATGGCAGCAAAGGATTCACATTTACGGAGGTGAATTCTGTTAGAGCAAGCTCAAGCAAAGTTTCCTCTTGCCACTTTTCATCTGATGGAAAGCTGCTTGTTAGTGGTGGTCATGATAAGAAGGCTGTATTATGGTACACAGAAAATTTGAAGCCGAAAACTTCACTTGAAGAACATGCTAACATTGTCACTGATGTTCGTTTTAGTCCTAGCATGCCTCGCCTTGCAACTTCATCATTCGATCGAACAGTCAGGGTTTGGGATGCTGACAATCATTGTTATTCTCTACGTACTTTTACGGGACATTCTGCTTCTGTTATGTCTTTGGACTTCCATCCAAAGAGGGATGACTTTATTTGCTCTTGTGATGGTGATGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGTGGTACGGGCCCAATGAGATTTCAACCTCGTCTTGGGAGATACTTTGCCGCTGTTGTAGATAATATCGTATCCATTTTTGATGTTGAGACACAAGCACGCCTGCATTCTTTACGGGGACACACCAAAACGGTTCAATCACTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCCGTTAGCGAGGATTCTGTTCGAGTGTGGACACTTGCTTCGGGGAATGAGGGTGAATCCATTCACGAGTTGAGCTGTAATGGCAATAAATTCCACTCTTGCGTTTTTCATCCCACCTACTCTACTTTGCTGGTTATTGGATGTTACGAGTCATTAGAGCTTTGGAACACGACGGAGAACAAGACGATGACTCTATCAGCTCATGAAGGTTTAGTATCTTCCTTAGCAGTATCCACAGCATCAGGTTTGGTTGCTTCGGCTAGCCACGACAGGTTCATCAAACTGTGGAAGTAA 2700 45.37 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGPSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAALKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVLHGSTGGMSPQVQSRNQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDVILKIKMAQLQQQQQQQQSSNQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVESFLSHDDGDPRDPVGRCMDGSKGFTFTEVNSVRASSSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHANIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKRDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRLGRYFAAVVDNIVSIFDVETQARLHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSTASGLVASASHDRFIKLWK 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4033494 4041968 - PI0005170.2 Cmetu03g2197 352341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 372 399 - -
Cmetu03g2197 899 SUPERFAMILY WD40 repeat-like 609 899 IPR036322 GO:0005515
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 416 543 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 867 899 IPR001680 GO:0005515
Cmetu03g2197 899 Gene3D - 597 751 IPR015943 GO:0005515
Cmetu03g2197 899 Pfam LisH 10 36 IPR006594 GO:0005515
Cmetu03g2197 899 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 899 - -
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 227 290 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 692 IPR001680 GO:0005515
Cmetu03g2197 899 SMART Lish 8 40 IPR006594 GO:0005515
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 529 543 - -
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 461 521 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 615 646 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 782 822 IPR001680 GO:0005515
Cmetu03g2197 899 CDD WD40 611 899 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 867 899 - -
Cmetu03g2197 899 Gene3D - 752 899 IPR015943 GO:0005515
Cmetu03g2197 899 Pfam WD domain, G-beta repeat 779 812 IPR001680 GO:0005515
Cmetu03g2197 899 Pfam WD domain, G-beta repeat 653 689 IPR001680 GO:0005515
Cmetu03g2197 899 Pfam WD domain, G-beta repeat 615 646 IPR001680 GO:0005515
Cmetu03g2197 899 Pfam WD domain, G-beta repeat 697 733 IPR001680 GO:0005515
Cmetu03g2197 899 Pfam WD domain, G-beta repeat 862 899 IPR001680 GO:0005515
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 656 IPR001680 GO:0005515
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 89 163 - -
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 227 267 - -
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 416 454 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 657 692 - -
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 700 742 IPR001680 GO:0005515
Cmetu03g2197 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 700 738 - -
Cmetu03g2197 899 Coils Coil 409 429 - -
Cmetu03g2197 899 ProSitePatterns Trp-Asp (WD) repeats signature. 676 690 IPR019775 -
Cmetu03g2197 899 MobiDBLite consensus disorder prediction 89 177 - -
Cmetu03g2197 899 SMART WD40_4 650 689 IPR001680 GO:0005515
Cmetu03g2197 899 SMART WD40_4 860 899 IPR001680 GO:0005515
Cmetu03g2197 899 SMART WD40_4 608 647 IPR001680 GO:0005515
Cmetu03g2197 899 SMART WD40_4 819 858 IPR001680 GO:0005515
Cmetu03g2197 899 SMART WD40_4 693 733 IPR001680 GO:0005515
Cmetu03g2197 899 SMART WD40_4 775 813 IPR001680 GO:0005515
Cmetu03g2197 899 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2197 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0178 Cmetu-Chr2:17550554 Cmetu03g2197 Cmetu-Chr3:4033494 3.90E-102 dispersed
Cmetu03g2197 Cmetu-Chr3:4033494 Cmetu06g1513 Cmetu-Chr6:2658647 1.00E-167 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7656 PF00400 WD40 0.0043 CL0186 Cmetu TR