Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2252 ATGGAGTTGAAAAAAACAGAAGTTGAGGAGAAAGTACAACAACAACAACGCCACCATTTCCATGTATTGGCTGTTGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTCAAGTTACCTGTGTTGAGTCTGGTGATAAAGCTCTTAGATATTTGGGCCTTCTTGATCATGATCTTGATCCATTTTCTTCTTCTTCATTTTCTTCCTCACAACTCTCCCAACATCAGGAAGTCAAAGTCAACCTAATCATGACAGATTTCTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAGCCATCACGAATCAACATGTGTTTAGAAGAAGGGGCAGAGGAATTCCTTCTAAAGCCTCTTCAATTATCAGATGTCAAGAAGCTTGAACCTCACCTTCAAAAATCCCTCACCCGCTCTTCTTCTGATCATCAAATCAAGGAACAACAAACAACACTCGGAATCGCCATTGACGACGAAAAAAACTCAAAATTAGAAGAGAGTAAGAATAGCATTAATAATAATAATAGTAGCTTGAGCAAGAGAAAGGCAGCAACTGCAGAGCATTGTGAAGAAAGATCACGACCAAAACTGAAAGAATTGCAAGCTGGAGTGTAA 693 38.82 MELKKTEVEEKVQQQQRHHFHVLAVDDSLIDRKLLEKLLTISSCQVTCVESGDKALRYLGLLDHDLDPFSSSSFSSSQLSQHQEVKVNLIMTDFCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRSSSDHQIKEQQTTLGIAIDDEKNSKLEESKNSINNNNSSLSKRKAATAEHCEERSRPKLKELQAGV 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13661054 13664402 + PI0022786.1 Cmetu03g2252 352396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2252 230 CDD REC_typeA_ARR 22 154 - -
Cmetu03g2252 230 SUPERFAMILY CheY-like 20 153 IPR011006 -
Cmetu03g2252 230 MobiDBLite consensus disorder prediction 159 230 - -
Cmetu03g2252 230 Coils Coil 187 207 - -
Cmetu03g2252 230 Pfam Response regulator receiver domain 78 152 IPR001789 GO:0000160
Cmetu03g2252 230 ProSiteProfiles Response regulatory domain profile. 21 159 IPR001789 GO:0000160
Cmetu03g2252 230 SMART REC_2 20 155 IPR001789 GO:0000160
Cmetu03g2252 230 MobiDBLite consensus disorder prediction 209 224 - -
Cmetu03g2252 230 MobiDBLite consensus disorder prediction 160 182 - -
Cmetu03g2252 230 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 212 IPR045279 GO:0009736
Cmetu03g2252 230 Gene3D - 21 228 - -
Cmetu03g2252 230 MobiDBLite consensus disorder prediction 193 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2252 K14492 - - csv:101216267 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2252 Cmetu-Chr3:13661054 Cmetu04g1441 Cmetu-Chr4:7713680 5.90E-43 dispersed
Cmetu03g2252 Cmetu-Chr3:13661054 Cmetu08g0497 Cmetu-Chr8:5227971 5.90E-43 wgd
Cmetu03g2252 Cmetu-Chr3:13661054 Cmetu09g0403 Cmetu-Chr9:11039384 1.60E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g251 Blo01g01297 . . . Bpe02g00640 . . Bma01g02073 Cmo04g02481 Cmo15g00681 . . . . Sed01g3118 . . Bhi04g01902 Tan11g1266 Cmetu03g2252 . . . Lcy10g1232 Cla08g00600 Cam08g1013 Cec08g0604 Cco08g0714 Clacu08g0726 . Cre08g0534 . . Cone17ag1286 Cone20ag0441 . Csa04g01951 . Cme03g00540 . . . . . . . . . . . . . Car04g02296 Car15g00618 Cpe01g02057 . . . . . . . . . . . . . . . Lsi08g00441 . Chy03g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7659 PF00072 Response_reg 3.40E-15 CL0304 Cmetu TR