Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2257 ATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGACATAGCACCAGAATTATTGCTCAAACCTCTGTTGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCATTCGACTACTCAAGTTCAGTGCGTGTCTCTAGTGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAGGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTACATGAAAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTCAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACAGACATGAGGACTATTTTCACTGCACCTAGTGCTTCTGCACTATTGAAGGCCTTGGGTTTTGGAGAGGTTACACTTCTTAATCCTATCTTAGTGCATTGCAAGACTTCTGGAAAACCCTTTTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAGATTGCAGTCCTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCCGCATGATTGTTGATTGTCGTGCAAAACATATAAAAGTGCTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCTCCACACTGTTGCCACTTACAGTATATGGAAAACATGAACTCTATAGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGCCGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGACTATGGGGGTTAGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTTGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAGAAAAATATTCTGCGTACACAGACACTCTTGTGTGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTAGCAAAATTTGGCGATTGGGCATGACACCCAGTGACTTCCATTTGCGGGACATTGCCTCGTGGCTTGCTGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCCGGAGCTCTTGCTTTAGGTGATGAAGTATGTGGGATGGCTGCTGTGCGGATAACTACTAATGATATGATTTTTTGGTTTCGGTCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAGAAGGACGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTGAAAACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTGATCCTTAGAAATACTTTTAAAGATACAGATACAGATGAAATAAATCGAAAATCAATTCAAATGACACTTGGCGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTTACTAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATACTTCTATAGAAGTTGTCAAGAAAATGTTGTATTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACGCACGGTTCTCATATTGAGGTTGGCTCGATCAGGCTTGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATTGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGAAAAAATTAACTGGGTGGTCACGCGAAGAAGTAATTGATAAGATGCTTTTAGGAGAGGTTTTTGGTGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCGATGAGTGGTCAAGATCCTGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAAGGATGGGGTGGTTACTGGGGTTTTTTGCTTTCTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCTTTGAAGAGATTGAGAGCATTGGGATACATAAAAAGACAGATACAAAATCCTCTTTCTGGGATAATCTTTTCGAGAAGATTATTGGAACGTACCGAGTTGGGAATAGAACAAAGGGAAATTCTGCTTACTAGCGTACACTGTCAAAAGCAGATCACCAAGGTTCTGGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGAAGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGCTATCCAGATAGTTAACGAGACTGTTGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTTCTACTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAACTGACAATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTCGTGCATTTGGAATTCAGGATAACGTATGCTGGAGGCGGTATACCCGAATTGTTGCTGAACGAGATGTTTGGTAGTGAGGAGGAGGCTTCTGAGGAGGGTTTTAGTCTACTGATCAGTAGAAAACTAGTGAAGCTAATGAATGGAGATGTAAGATACATGAGGGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGTATGTAG 3246 41.47 MSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSSDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALHEKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDMRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVRMIVDCRAKHIKVLQDEKLQFDLTLCGSTLRAPHCCHLQYMENMNSIASLVMAVVVNEGDEDAEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLSKIWRLGMTPSDFHLRDIASWLAEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTDEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDTSIEVVKKMLYLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMKKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQREILLTSVHCQKQITKVLEESDLDKIIDGFIDLEMVEFTLHEVLKVSISQVMIKSKGKAIQIVNETVEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPELLLNEMFGSEEEASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASM 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6713839 6719177 + PI0008187.1 Cmetu03g2257 352401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2257 1081 Gene3D - 374 536 IPR043150 -
Cmetu03g2257 1081 CDD PAS 718 829 IPR000014 -
Cmetu03g2257 1081 SMART HisKA_10 851 915 IPR003661 GO:0000155|GO:0007165
Cmetu03g2257 1081 Pfam PAS fold 69 185 IPR013654 GO:0006355
Cmetu03g2257 1081 CDD PAS 585 691 IPR000014 -
Cmetu03g2257 1081 ProSiteProfiles Histidine kinase domain profile. 858 1077 IPR005467 -
Cmetu03g2257 1081 Gene3D - 199 255 IPR029016 -
Cmetu03g2257 1081 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 PRINTS Phytochrome signature 689 709 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 PRINTS Phytochrome signature 596 611 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 PRINTS Phytochrome signature 506 524 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 PRINTS Phytochrome signature 669 686 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 PRINTS Phytochrome signature 577 593 IPR001294 GO:0006355|GO:0009584
Cmetu03g2257 1081 ProSiteProfiles PAS repeat profile. 574 644 IPR000014 -
Cmetu03g2257 1081 FunFam Phytochrome 374 494 - -
Cmetu03g2257 1081 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 963 1073 IPR003594 -
Cmetu03g2257 1081 SUPERFAMILY PYP-like sensor domain (PAS domain) 580 687 IPR035965 -
Cmetu03g2257 1081 Gene3D PAS domain 721 835 - -
Cmetu03g2257 1081 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 909 1070 IPR036890 -
Cmetu03g2257 1081 SMART HKATPase_4 963 1075 IPR003594 -
Cmetu03g2257 1081 MobiDBLite consensus disorder prediction 39 56 - -
Cmetu03g2257 1081 MobiDBLite consensus disorder prediction 1 24 - -
Cmetu03g2257 1081 Gene3D - 914 1079 IPR036890 -
Cmetu03g2257 1081 SMART gaf_1 218 379 IPR003018 GO:0005515
Cmetu03g2257 1081 Pfam Phytochrome region 382 545 IPR013515 GO:0006355|GO:0009584
Cmetu03g2257 1081 SUPERFAMILY PYP-like sensor domain (PAS domain) 721 827 IPR035965 -
Cmetu03g2257 1081 Gene3D PAS domain 262 290 - -
Cmetu03g2257 1081 Gene3D PAS domain 74 198 - -
Cmetu03g2257 1081 Gene3D - 256 519 IPR029016 -
Cmetu03g2257 1081 Pfam PAS fold 707 829 IPR013767 GO:0006355
Cmetu03g2257 1081 Pfam PAS fold 577 691 IPR013767 GO:0006355
Cmetu03g2257 1081 SMART pas_2 706 775 IPR000014 -
Cmetu03g2257 1081 SMART pas_2 576 642 IPR000014 -
Cmetu03g2257 1081 ProSitePatterns Phytochrome chromophore attachment site signature. 287 296 IPR013516 -
Cmetu03g2257 1081 SUPERFAMILY GAF domain-like 198 366 - -
Cmetu03g2257 1081 PANTHER OS08G0260000 PROTEIN 67 912 - -
Cmetu03g2257 1081 Pfam GAF domain 221 369 IPR003018 GO:0005515
Cmetu03g2257 1081 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 359 IPR016132 -
Cmetu03g2257 1081 Coils Coil 366 386 - -
Cmetu03g2257 1081 FunFam Phytochrome 570 701 - -
Cmetu03g2257 1081 ProSiteProfiles PAS repeat profile. 707 759 IPR000014 -
Cmetu03g2257 1081 MobiDBLite consensus disorder prediction 39 62 - -
Cmetu03g2257 1081 SUPERFAMILY GAF domain-like 377 543 - -
Cmetu03g2257 1081 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Cmetu03g2257 1081 Gene3D PAS domain 569 706 - -
Cmetu03g2257 1081 NCBIfam PAS domain S-box protein 581 697 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2257 K12120 - - csv:101208491 2041.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2257 Cmetu-Chr3:6713839 Cmetu06g1585 Cmetu-Chr6:5450876 0.00E+00 dispersed
Cmetu03g0436 Cmetu-Chr3:6684261 Cmetu03g2257 Cmetu-Chr3:6713839 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56