Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu03g2269 ATGGCCGGCCGCTTCGACTTTGGTTCTCGTCCCAATCTCTCTGTTTCCAGTCCTCTCCATGCTGCCAATGATGTTCAGGGATCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCAAAGCCAGGGGAGAGTAAGCATGGAATTGGAACTGGGGAAAATCATTTCAGTCATCAACCTGCTTATGGGAATCGCATGGACATGATGAAGGGATCTGAGAATTATGAGGATATGAATGACATACAAAAGAAAAAAGAAGTGTTTAGGCCATCCCTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGATGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGCGAGAAAGAAATGGGTGACAGTCGCAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGGGAATCTCGTCGAGGGCCATCAGAACGCTGGTCTGATTCAAATAATCGGGATAATGTTCATTATGATCAACGGCGTGAGAGCAAATGGAATACACGATGGGGCCCTGATGATAAGGAAACTGAAGGCATTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGACAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACAGAGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCGCTCAGGGTCGAGGTAAGGGAGAGCAGCCTCATCATCAAACCCAAACTCCAAGCAAACAAGTCCCTGCATTTTCCCATCGTGGACGTGCAGACAACACGCCTCCTACCTTCTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTACCAATAGTATTTATTCATCTCCCAATTATCTTGGAGCTTCTTCCGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGAACCACCAATTTGACATCACAGCAAACTTTAAAAGATGGATTTGTGCCTGTGCCTACTCTTACACTGGATGAACCTTTGGAGCCTCTTGCTCTTTGTGCACCAACTACGGAAGAAATGACTTTTCTGAAGGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCACAAGTGTCAAAGGATGGTAGAAACTCATCAGAATTTATGCAAGCAAGGCGAACAAAACTTGGTGTTTCACCTTCCCTAGGCAGTAGAGAAGATTTACCCCATGGGTTTGATGACTACAACGATGATAAGGATGACAGCACCACCAAACTTGGTCACACAAACTATTCAGAGGTCTCTTCTGAGAGGCAGGTGCCTTATCACAGGCCACAGTCAAAAAATGAAGCCATTCAGGAACAGATGGGACATACTAGTGGCACTTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTCTGAGAAAAACAGATGAGGTGCCCGGCAGTAGGGAATCGAGTGTTAAGGGGGGTACCAATATTCATCCTGGCAGCACATGGGATGCCTCATCACTTGAGCAACCCCCAAATACATCCTTGCCTGATTGGAGAGACAATCCTAATAATATTAGCTCAGGAACTCCCGACAAGGGTTGGGTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAGCACAACTACTCCATCTTATGCGAAGGATAATTCTAAGTGGCAGACTGCAGAGGAATCTATCATTAGAAGGCAGCTTTCAGGGATTTTAGACAAGGAACAACTATCGCGGAAAACCGTTCAACCTGCTCCAGAGGATTTGCAACTTCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCTTTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCCGACAAATGCACCAAGTGACTTGCCATTTTCAGCACTTGGTGATGTTATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTAGTGGACCGAAGCAGAATGAATTTGCAGATTCATTAGGTAACACTAGTTTCGGTAGCTTGGGGAAGCACCATACTGGGTTGAATGAAATAGATACTATGAGGAATGAGACAAGGCATAAACATGGCTCAACGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTGGCAATATAGGTTCTTCACCTCTTGAGAAGAGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAAATAATCTTAATAGTCTGTCTTCCTTGGGAATAGACAATGGAAACAACCTCTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAAAGGTCTTTGTCCAACCCTTATGCATTTTGGCCTGGAATAGATGCTACATCCAAGGTATCTAAGCCGGATGTTGGCCTAGATGATCCAATTCAGCAAGCCAAACTCTTGTCTTCAATCATAGACCACTCTCGTCAAACTTCTCATTCTCAAAGTCCCGACATGTCAGCCATTCTACAAGGCTTATCTGACAAAGCACCTCCTGGAATTAATGAGGTTGCAGGGTGGTCCAAATTTGCTCAGTGTGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTACAACCACAGCCATCCTTGACAAATTTACTTGCCCAAGCTACTGATAATCCTACCTTAACTCCAGATAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACTTGTTGCAGCTGCATTCTCAAGTGCCTTTCTCTGCCCAACAAATGTCGTTGTTAGACAAACTTTTATTACTTAAGCAGCAGCAAAAACAAGAAGAGCAACAACAGTTATTACAGCAACAACAGTTGCTTTCGCAGGTTCTATCTGAGCATCAGTCACGTCAGCATCTTATCGATCCATCTTTTGGACAGTTACAAGGTGCTCCTATACCTATGGGAAATGCATCTACTGATCCATCTCAAGTCCAGCAACCACGAGAGAAATTTCAAATTGGTTCACAGAAGCCCTTAAATGTCGTAACGGATCGTGCGATTCCCTTTGGAAATATGGCTTTGCAAGTCACCCAAGGTGCCAGTTACAATGTTAATTCTGAAGATCCTTCCCTTGCTCTTCCGCATCAAATGTTTGGAAATGTTCAGCAGAAGGGTTGGACTCCTGGTCTCCCAGAGCAGCTTACTGATACTCACCCGAATGATATGTTACCTGGATCTATAGTTGGTGAGGCCTCACTTTTTCCTGGGTTGACTAGCAAACCAATCGAGGATGTGAGTCATGTACAAAAGTCACCTGATAGCCACACTATTCAAGCTTTGGAGCAGATAGGAGAGGATGTACCAAGGCTGGATGCAACTGTCACATCTATTGCATCTGATGCCATGGTAGAACCTCTTCCTCTCAAGACTGCTGATATTTCAGTTGCTCTACAACCAGCAGAAGTTCATGATATTGAAGTTTCCATTCCCGATAGTGTACCTGTTCTGAAGGTTCAAGAAGCTAGTATGCCTGTGCAAAAACTTGAAAGGGGTGGATGCAAAGACGATACCTCCTTGGAGATTGAATTGAAAAATGTTGAAGTACAAGAACCTAAAAAATCTTCTGATAAAAAGACCAAGAAACAAAAATCTTCGAAGTCACTTTCCTCAGACCCTGCCAAGGACTCTAAGAATTCTGCTATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGGCAGATAATATCATGGGAAAATCAAGTGATATGACTTCCTCTCCTCGGAAGATCAGAGATGGAGATGATGACAAAATTTCCGTTGTGGACAATCAGCCAGTTCAAAGCTCTGCCTCTGCTATGAATACCTGGAACGATGGTGACACTGTTCAAGTGAAGGATGATGCCAGACTAATTGGGTCCGATTCTGTCCTTAACCCACAAACTCAATCTGGCCAAAGAGCTTGGAAAGTTGCTTCGAGTTTCAAGCCAAAGTCGTTATTGGAAATTCAGGAGGAAGAGCAGAAAAGGGCACATACAGAAACGGCTGTATCAGAGATTTCCACTTCTATCACCTCTACGAGTTTATCAACTCCTTGGGCTGGGATTGTGAACAGTTCAGACCCTAAAGCTTCCAAAGAAATTCATAAAGATTCTGTGATTTCAGAATCAAGTGAGAAACATGAAAATTTATTGACTTCAAGGAGTAGAAAGAGCCAATTGCATGATCTGCTGGCAGAAGACAATATGGAAAAGTCTGGTGCAAGTGATGTTTGTGTTTCTGACTCTGTACAGATTGCTTCTTCTCCTCGTGTCATGGCCACACAGGCAGAACCCATGCATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGCAAGAAGTCTTCCAAGGCTAAGGGCGCTGGTACCAAGCCCTCCGCTCCAGTCCCTACTGCCGATGTGCCAGTTGGTTCAAGTCCCATTGAGAAAGGGAAAATCTCCCGCCAAACCCTGCCGGAGAAGGAAGCAATGCCTGCCATTCCTTCTGGGCCTTCTTTTGGTGACTTTGTCCTGTGGAAGGGAGAAGCTGCTAACGTGGCCCCGGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTCCCCAAACCCGCTTCTTTGAGGGATATTCAGAAGGAGCAGGGAAGAAAAACCTCTGCTGCTCAGCATTCTCATCAAATCCCCACTCCCCAAAAGGCTCAGCCTAGTCAGGTTGGACGGAGCAGCAGCACTAGTACTCCTTCCTGGTTGGTCGGAGCAGCAGCACTAGGAACTCAGTCAAATCATGGAGGCGACGATGACTTATTTTGGGGCCCCATTGAGTCAAAGAAAGAAAATCAGCAGGTTGATGTTCGTCTCGGGAGCAACAACTGGGGAAATAGGAACGCTCCTGCAAAAGCAGCTTCGACTGGGGTGTTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACTATCTTTCATCCTTGCCGGCACAGTCATCTCAGAAAGGCAAACAAGATTCAGTTACCAAGCATTCAGAAGCTATGGGCTTCCGCGATTGGTGTGAGAGTGAATGTGCAAGGCTCATTGGGACAACAGACATAAGTTTACTGGAATACTGCTTGAAGCAATCGAGATCTGAGGCAGAGCTGCTTTTAATAGCGAACCTTGGATCATATGATCCTGGCCACGACTTCATCGATCAATTACTAAATTACAAGGAGTTGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAGTCGCAACGACAGGAAGGTATCGGCTATTGCTTCCCAAGAAGTAAATTCAGGCAATGCTGGTGGGGATCTGGACCCTGATGTCCCTGTTGGCCGGGATGGGTCTGCAAAGAGTGGAGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTTAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAACCGAATCATGATGGGCGAGATTCAGACGATTGAAGATTAG 5508 44.66 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGTGENHFSHQPAYGNRMDMMKGSENYEDMNDIQKKKEVFRPSLTDSEIGRRDRWHDEERENNSSMRKDRWRDGEKEMGDSRKMDRWNEDSSTRVFRESRRGPSERWSDSNNRDNVHYDQRRESKWNTRWGPDDKETEGIREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSAQGRGKGEQPHHQTQTPSKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPTNSIYSSPNYLGASSEKSGREPYYYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVPTLTLDEPLEPLALCAPTTEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQARRTKLGVSPSLGSREDLPHGFDDYNDDKDDSTTKLGHTNYSEVSSERQVPYHRPQSKNEAIQEQMGHTSGTFKSEAFREDDNALRKTDEVPGSRESSVKGGTNIHPGSTWDASSLEQPPNTSLPDWRDNPNNISSGTPDKGWVQSSKNLNDGWGSSTTTPSYAKDNSKWQTAEESIIRRQLSGILDKEQLSRKTVQPAPEDLQLHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRPTNAPSDLPFSALGDVMPHLRSKAKPPPGFSGPKQNEFADSLGNTSFGSLGKHHTGLNEIDTMRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGVPGYFGNNLNSLSSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDATSKVSKPDVGLDDPIQQAKLLSSIIDHSRQTSHSQSPDMSAILQGLSDKAPPGINEVAGWSKFAQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPSLTNLLAQATDNPTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFSAQQMSLLDKLLLLKQQQKQEEQQQLLQQQQLLSQVLSEHQSRQHLIDPSFGQLQGAPIPMGNASTDPSQVQQPREKFQIGSQKPLNVVTDRAIPFGNMALQVTQGASYNVNSEDPSLALPHQMFGNVQQKGWTPGLPEQLTDTHPNDMLPGSIVGEASLFPGLTSKPIEDVSHVQKSPDSHTIQALEQIGEDVPRLDATVTSIASDAMVEPLPLKTADISVALQPAEVHDIEVSIPDSVPVLKVQEASMPVQKLERGGCKDDTSLEIELKNVEVQEPKKSSDKKTKKQKSSKSLSSDPAKDSKNSAIQQSKQSKSGKSENDLKLKADNIMGKSSDMTSSPRKIRDGDDDKISVVDNQPVQSSASAMNTWNDGDTVQVKDDARLIGSDSVLNPQTQSGQRAWKVASSFKPKSLLEIQEEEQKRAHTETAVSEISTSITSTSLSTPWAGIVNSSDPKASKEIHKDSVISESSEKHENLLTSRSRKSQLHDLLAEDNMEKSGASDVCVSDSVQIASSPRVMATQAEPMHDNFIEAKDTKKSRKKSSKAKGAGTKPSAPVPTADVPVGSSPIEKGKISRQTLPEKEAMPAIPSGPSFGDFVLWKGEAANVAPAPAWSSDSGKVPKPASLRDIQKEQGRKTSAAQHSHQIPTPQKAQPSQVGRSSSTSTPSWLVGAAALGTQSNHGGDDDLFWGPIESKKENQQVDVRLGSNNWGNRNAPAKAASTGVLSRQKSSGGKADYLSSLPAQSSQKGKQDSVTKHSEAMGFRDWCESECARLIGTTDISLLEYCLKQSRSEAELLLIANLGSYDPGHDFIDQLLNYKELLPADVLEIAFQSRNDRKVSAIASQEVNSGNAGGDLDPDVPVGRDGSAKSGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTIED 1835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1779992 1788789 - PI0013999.1 Cmetu03g2269 352413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1635 1684 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1268 1282 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1537 1595 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1284 1303 - -
Cmetu03g2269 1835 SUPERFAMILY GYF domain 580 647 IPR035445 -
Cmetu03g2269 1835 Gene3D - 578 659 IPR035445 -
Cmetu03g2269 1835 CDD GYF 590 647 IPR003169 GO:0005515
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 71 226 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1 275 - -
Cmetu03g2269 1835 Coils Coil 948 968 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1373 1411 - -
Cmetu03g2269 1835 ProSiteProfiles GYF domain profile. 590 641 IPR003169 GO:0005515
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1385 1411 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1198 1303 - -
Cmetu03g2269 1835 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1835 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1198 1226 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1227 1245 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 425 460 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 462 482 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 664 679 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1347 1366 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1635 1680 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 405 424 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 485 557 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1772 1812 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1568 1595 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 10 33 - -
Cmetu03g2269 1835 Pfam GYF domain 594 629 IPR003169 GO:0005515
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 392 557 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 1446 1525 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 648 686 - -
Cmetu03g2269 1835 MobiDBLite consensus disorder prediction 233 253 - -
Cmetu03g2269 1835 SMART gyf_5 591 649 IPR003169 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu03g2269 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2269 Cmetu-Chr3:1779992 Cmetu11g1068 Cmetu-Chr11:1593502 2.80E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44