Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0034 ATGGTTTTGGAGGAGAAAGTGTCTTTGGAGCTAACTGAAGAAATCCTTCAAAGCATGGAAGTAGGCATGACATTCAGAGACTATAATGGTAGAATCAGTTCAATGGATTTTCATAGGACTTCAAGCTATCTGGTGACTGCAAGTGATGATGAATCCATCCGACTTTATGATGTTGCCAGGTGTTTGTGGTTCCAGATGTTTGAAAACAATCAACAGCAAAAGTACGGGGTTGATCTGGTTTGCTTTACTTCTCATCCTACAACAGTGATATATTCTTCAAAAAATGGGTGGGATGAGTCTTTGCGGCTTCTCTCCTTGAACGACAATAAGTACCTGCGGTACTTTAGAGGTCATCATGACAGAGTTGTATCACTCAGCTTATGTGCTCGCAAAGAATGCTTTATATCTGGGTCTCTTGATCGAACTGTTTTGCTTTGGGATCAAAGGGCAGAGAAATGCCAGGGTCTTTTACGTGTACAAGGAAAGCCAGCTACAGCATATGATGAGCAAGGTGTCGTCTTTGCCATTGCCTTTGGAGGTTACATAAGGATGTTTGATGCTCGCAAATATGAGAAGGGTCCTTTCGATATATTTTCTGTTGGGGAAGATATATCTGATGCAAATATTGTAAAGTTCAGTAATGATGGGAGACTCATGTTGTTGACGACTTCAGATGGGCATATTCATGTTCTTGATTCTTTCAGAGGAACACTATTATCTACGTACAATGTAAAACCCATTTCAAGCAATTTGACATTGGAGGCATCTTTTAGTCCAGAGGGAATGTTTGTGATATCAGGTTCGGGAGATGGCAGTGTTTATGCTTGGAGTGTAAGGAGTGGAAAAGAGGTTGCAAGCTGGATGAGCACTGAAATGGAGCCTCCTGTCATAAAGTGGGCTCCAGGAAGTCTAATGTTCGCGACGGGATCTTCTGAACTGTCATTTTGGATACCTGATTTGTCTAAATTGGGAGCTTATGTAGACAGAAAATAG 993 41.39 MVLEEKVSLELTEEILQSMEVGMTFRDYNGRISSMDFHRTSSYLVTASDDESIRLYDVARCLWFQMFENNQQQKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLNDNKYLRYFRGHHDRVVSLSLCARKECFISGSLDRTVLLWDQRAEKCQGLLRVQGKPATAYDEQGVVFAIAFGGYIRMFDARKYEKGPFDIFSVGEDISDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISSNLTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAPGSLMFATGSSELSFWIPDLSKLGAYVDRK 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3772130 3776145 + PI0020794.1 Cmetu04g0034 352478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0034 330 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Cmetu04g0034 330 PRINTS G protein beta WD-40 repeat signature 44 58 IPR020472 -
Cmetu04g0034 330 PRINTS G protein beta WD-40 repeat signature 134 148 IPR020472 -
Cmetu04g0034 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 115 147 IPR001680 GO:0005515
Cmetu04g0034 330 Gene3D - 11 317 IPR015943 GO:0005515
Cmetu04g0034 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 25 58 IPR001680 GO:0005515
Cmetu04g0034 330 PANTHER WD40 REPEAT PROTEIN SWD2 6 322 IPR037867 -
Cmetu04g0034 330 SMART WD40_4 235 277 IPR001680 GO:0005515
Cmetu04g0034 330 SMART WD40_4 108 147 IPR001680 GO:0005515
Cmetu04g0034 330 SMART WD40_4 18 57 IPR001680 GO:0005515
Cmetu04g0034 330 SMART WD40_4 191 232 IPR001680 GO:0005515
Cmetu04g0034 330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 25 58 - -
Cmetu04g0034 330 SUPERFAMILY WD40 repeat-like 17 311 IPR036322 GO:0005515
Cmetu04g0034 330 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 286 IPR001680 GO:0005515
Cmetu04g0034 330 FunFam protein ANTHESIS POMOTING FACTOR 1 isoform X1 15 317 - -
Cmetu04g0034 330 Pfam WD domain, G-beta repeat 256 276 IPR001680 GO:0005515
Cmetu04g0034 330 Pfam WD domain, G-beta repeat 111 147 IPR001680 GO:0005515
Cmetu04g0034 330 Pfam WD domain, G-beta repeat 30 57 IPR001680 GO:0005515
Cmetu04g0034 330 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 115 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0034 K14962 - - csv:101202819 620.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0034 Cmetu-Chr4:3772130 Cmetu04g2237 Cmetu-Chr4:9644415 1.10E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1107 . . Bda04g00022 . . . . . . . Cma03g00688 Cma07g00430 Car03g00634 Car07g00378 Sed14g1189 Cpe19g00857 Cpe10g00661 Bhi03g00871 Tan03g2068 Cmetu04g0034 . Hepe04g1588 . . Cla01g01977 Cam01g2071 Cec04g1730 Cco04g1795 Clacu01g2092 Cmu01g1968 Cre04g1643 . . . . Lsi01g00605 . . Cme08g00924 Blo05g00828 . . . . Bpe06g00022 . . . Cmo03g00714 Cmo07g00428 . . . . . . . . . . . . . . . . . . . . . Csa06g03322 Chy02g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008578 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34