Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0061 ATGGCTTCCCTCTTCGTTTTCCCCCAAACCCTTCGATCTCTCGAACAAGACTACGAAGACAACCGTCTCTCCGTTCAGAATCCCACTGAAATTGCCTCTCTTCCTCCATCTCAACTCGAAGAATTCGTCAAAGGCATTTCTTTTGATCTTTCCGATAAGGACCTCTTCTGCGTTGAAGAGCAGGATATTTTCGACCGTGTTTACTCTTTGATTCGAGACTACAAACACCTCTCTCCCTCTTGTAAGTTGAATATTGTCGAGAGTCTTCGCTCCAATTTCAGTGTTCTTCTTCCCAACATTGATTCGCTTGCACGTGCTTCCCCAAGTAATGATGGAGACGCTCCGGTGCTTGATCAGATTGCGTCCCATCGTAATGCTTTTAAAATCTATACGTTTTTCCTCCTCAATATCGTCAACAGTGAGGAAGCTAGTGCTAGTAGTAGCAACAATTCAAAGGTGACCGCAAGTACTCGGAAGAAAATGCCCAAAAGTTCGTGGAATTGGGAAATGCAGAGGGGCCGTATATTAAACTTGATTGCTAATTCACTGGAGATCAATATCTCGTTGCTCTTTGGTTCACCAGATCCAGATGAGAATTATCTGTCTTTTATTGCAAAAAACGTGTTCTCAATGTTCGAGAATTCAGTCCTTTTGAAGGACGTTGACACAAAGGATGCTCTGTGTCGTATAATTGGTGCTTGTTCTACAAAATATCACTTTACTACCCAATCATGTGCCTCAATTATGCACCTTATTCATAAGTATGATTACGTTGTGACCCATATGGCCGATGCTGTTGCTGGGGCAGAGAAGAAATATTCGGATGGAATCCTGGCAATCTCTCTTATTAGAGATGTTGGAAGGACTAACCCGAAAGAATATGTTAAAGATACAGCTGGGGCTGAAAACATAGGGCGATTCCTAGTAGAGCTTTCTGACAGGCTCCCAAAGTTGTTCTCAACCAACATTGGACTTCTGATTCCACATTTTGGTGGTGAATCCTATAAAATAAGAAATGCTCTGGTGGGGGTTCTTGGTAAGTTGACTGTTAAAGCGTTTTGCGACATTGAAGGTGAACAGAGTTGTAAATCAGTTCGTCTTCGGAGCAAGCAGGCAATGCTAGAAATCTTGCTTGAACGTTGTCGGGATGTTTCAGCTTACACTAGGAGTCGAGTTCTTCAGGTTTGGGCTGAGCTATGTGAAGAACATTCTGTTTCTATCGGTTTGTGGAATGAAGTGGCAGCAGTTGCAGCTGGAAGATTGGAGGATAAGAGTGCAATTGTCCGAAAATCTGCATTGCAATTGCTCATCACTATGTTGCAGCACAATCCATTTGGCCCACAGCTACGAGTAGTTTCATTTGAAGCAACTCTAGAGCAGTATAAGAAGAAATTAGACGAGCTTGAACCTAACAAGTGCTCAGAAAATGTGGATGGTGGCTCACCATTTGATGACGATATCTTTAATGGTGATGGTGAGGTTGATAACGGCCATATAGAAGGTGGGGGAGGGAACCAGCAGGATAGTTTAACTGATAGTTATCCTCCTCAAATGGAAGAAGAGGTTGTTCAGAAGGACAACTTGACTTTGGATGTTGGAAACACGGAGCAGATCAGGGCTTTGGTTGCATCTCTGGAGGCTGGTTTGAGGTTTTCAACATGTATATCAGAAGCAATGCCAATACTAGTTCAGTTAATGGCTTCTTCTTCTGCCACTGACGTTGAGAATACAATTCTTTTGTTGATGAGGTGCAGACAATTCCAAATAGATGGCTCAGAGGCCTGCCTCCGTAAAATGTTGCCACTGGCATTTTCTCAAGATAAATCTATATATGAAGCTGTTGAGAATGCCTTCATAACAATATATATAGCAAAAAACCCAATTGAAACTGTCAAAAATCTTCTACATCTTGCCATTGATTCAAACATTGGAGATCTTGCCGCACTGGAGTTTATGATTGATGCCTTGGTGTCGAAAGGTGATATATCTAGTAGCACGATATCAGCTTTATGGGATTTCTTTTGCTTTAATGTTGGTGGAACAACAGCAGAGCAAAGCCGGGGAGCATTATCTGTTCTTTGCATGGCATCAAAATCATCTGCTGGTATTCTTGGCTCTCATATACAGGACATTATCGACATTGGGTTTGGTCGATGGTCTAAGGTGGAGCCTTTACTTGCCAGGACAGCGTGCATTGCCATCCAGAGACTGTCTGAAAATGACAAAAAAAAGTTGTTGGCTGGTAATGGTAGCCGGGTGTTCGATAAGCTGGAAAGCTTGATTACTGGTTCTTGGCTTCCAGAGAAGATATGGTATGCTGCTGCTGATAAAGCCATAGCAGCTGTATATTCAATTCATCCGTCCCCTGAAATCTTAGCAGCAACTTTGGTTAAAAATTCTCTTACTTCTGTTTTTAATGGTAACAAGGATGATGAACTACAAGCTGACGTTGAAAGTGGAAATGGGGACATATTAACTACTGTCCACATAGATAAACTAAGTAGATATTTATTTATCGCGAGTCATGTTGCCATGAACCAATTAGTATATATCGAATTGTGCACCCGAAAAATCCAGAAACAAAAAGCTAAGGAAAAAACGGTTGTTGATGGTCAGACTGGACACGGTAATGGTGGAACAGTAGCTAATGGCGAGAAGGAAGATGGCATCAATGCTGAGCTAGGCCTTGCTGCTTCTGAAGATGCAATTGTTGATTCTCTTTCAGAGAAGGCAGAAAAAGAAATTGTTTTTGGTAATTCAAGAGGGAAGAATTTAATAGGACACTGTGCGCCGTTTCTTTCCAAGCTTTGCAGAAATTTTAGCTTGATGCATAAGTTCCCAGATCTACAAGCATCTGCAATGCTTGCTCTATGTCGTTTAATGATCATTGATGCAGATTTTTGCCAAGAAAATCTTCAACTTCTTTTCACCGTTGTAGAAACTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCTGTTCGTTTCCCTAATCTCTTGGAGCCATGGACTGAGAATATGTACGCAAGGTTGAAGGATCCTTCGAATTCTGTTAGGAAGAATGCTGTATTGGTGCTATCTCATCTCATTTTAAACGATATGATGAAGGTAAAAGGTTATATAAATGAAATGACTCTACGTTTAGAAGATGAGGATGAGAGAATATCAAATCTGGCCAAACTGTTCTTTCACGAGTTGTCTAAGAAAGGAGCAAATCCAATATACAATCTACTACCAGATATATTAGGAAAGCTTTGTAATCAAAATCTACAGAGAGAATCCTTTTGTAACATTATGCAATTCTTGATTGGCTCCATCAAGAGGGATAAACAAATGGAGTCACTTGTCGAAAAGCTATGCAATAGGTTTAGTGGAGTTTCAGATGTTAGACAGTGGGAATATATTTCATATTGCCTTTCTCAGCTCGGCTTCACCGAAAAGGGAATGAAAAAGTTGATAGATTCATTCAAGACGTACGAACATGTTGTTTCGGAGGACTCTGTAATGGAACATTTCAAAAGCATCATAAACAAGAGTAAGAAATTTGCTAAACCAGAACTCAAGTTGTGCATCGAAGAATTCGAAGAAAAGCTTAACAAGGCTCATACGGAAAGGAAGGAGCAGGAAGTTACTGCTAGAAATGCCAAGATTCATCAACAGAGAATTGATAATATTGAAACTACTTCTATGGCAGTGAAAAATGAAGATCCTCCAGAGTCCGAAATCACTGAAGGTGAAAACACTGAATCATCAGAAGATGTTGAATCTATAAATGACAATTCAGAACCTAAGTTCGTTGAGTCGGAAGATTCTGGTACTTCCAGTGAGCTGACAGGGTTAGAAACTTGTAAAACTGAAATTCAATCACCCCAAGTTGAGAATGAAGGGACCTCCAAATTGCGAGTTAAGAGAAGAAGCTCACGTAGAAGAGGCATTTCTTCGTGA 3963 40.7 MASLFVFPQTLRSLEQDYEDNRLSVQNPTEIASLPPSQLEEFVKGISFDLSDKDLFCVEEQDIFDRVYSLIRDYKHLSPSCKLNIVESLRSNFSVLLPNIDSLARASPSNDGDAPVLDQIASHRNAFKIYTFFLLNIVNSEEASASSSNNSKVTASTRKKMPKSSWNWEMQRGRILNLIANSLEINISLLFGSPDPDENYLSFIAKNVFSMFENSVLLKDVDTKDALCRIIGACSTKYHFTTQSCASIMHLIHKYDYVVTHMADAVAGAEKKYSDGILAISLIRDVGRTNPKEYVKDTAGAENIGRFLVELSDRLPKLFSTNIGLLIPHFGGESYKIRNALVGVLGKLTVKAFCDIEGEQSCKSVRLRSKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAAVAAGRLEDKSAIVRKSALQLLITMLQHNPFGPQLRVVSFEATLEQYKKKLDELEPNKCSENVDGGSPFDDDIFNGDGEVDNGHIEGGGGNQQDSLTDSYPPQMEEEVVQKDNLTLDVGNTEQIRALVASLEAGLRFSTCISEAMPILVQLMASSSATDVENTILLLMRCRQFQIDGSEACLRKMLPLAFSQDKSIYEAVENAFITIYIAKNPIETVKNLLHLAIDSNIGDLAALEFMIDALVSKGDISSSTISALWDFFCFNVGGTTAEQSRGALSVLCMASKSSAGILGSHIQDIIDIGFGRWSKVEPLLARTACIAIQRLSENDKKKLLAGNGSRVFDKLESLITGSWLPEKIWYAAADKAIAAVYSIHPSPEILAATLVKNSLTSVFNGNKDDELQADVESGNGDILTTVHIDKLSRYLFIASHVAMNQLVYIELCTRKIQKQKAKEKTVVDGQTGHGNGGTVANGEKEDGINAELGLAASEDAIVDSLSEKAEKEIVFGNSRGKNLIGHCAPFLSKLCRNFSLMHKFPDLQASAMLALCRLMIIDADFCQENLQLLFTVVETAPSDIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSNSVRKNAVLVLSHLILNDMMKVKGYINEMTLRLEDEDERISNLAKLFFHELSKKGANPIYNLLPDILGKLCNQNLQRESFCNIMQFLIGSIKRDKQMESLVEKLCNRFSGVSDVRQWEYISYCLSQLGFTEKGMKKLIDSFKTYEHVVSEDSVMEHFKSIINKSKKFAKPELKLCIEEFEEKLNKAHTERKEQEVTARNAKIHQQRIDNIETTSMAVKNEDPPESEITEGENTESSEDVESINDNSEPKFVESEDSGTSSELTGLETCKTEIQSPQVENEGTSKLRVKRRSSRRRGISS 1320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7724993 7733051 - PI0011501.1 Cmetu04g0061 352505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0061 1320 Pfam non-SMC mitotic condensation complex subunit 1, N-term 80 242 IPR024324 -
Cmetu04g0061 1320 Gene3D - 980 1210 IPR011989 -
Cmetu04g0061 1320 MobiDBLite consensus disorder prediction 1273 1302 - -
Cmetu04g0061 1320 PANTHER CONDENSIN 14 1270 IPR026971 GO:0007076
Cmetu04g0061 1320 MobiDBLite consensus disorder prediction 489 513 - -
Cmetu04g0061 1320 MobiDBLite consensus disorder prediction 1208 1320 - -
Cmetu04g0061 1320 PIRSF Condensin_D2 1 1290 IPR007673 GO:0000278|GO:0005634|GO:0030261
Cmetu04g0061 1320 Coils Coil 1047 1067 - -
Cmetu04g0061 1320 Coils Coil 1197 1217 - -
Cmetu04g0061 1320 Gene3D - 288 469 IPR011989 -
Cmetu04g0061 1320 MobiDBLite consensus disorder prediction 1208 1226 - -
Cmetu04g0061 1320 FunFam Condensin complex subunit 1 980 1207 - -
Cmetu04g0061 1320 SUPERFAMILY ARM repeat 302 1212 IPR016024 -
Cmetu04g0061 1320 Pfam non-SMC mitotic condensation complex subunit 1 986 1146 IPR032682 -
Cmetu04g0061 1320 MobiDBLite consensus disorder prediction 1247 1262 - -
Cmetu04g0061 1320 FunFam Condensin complex subunit 1 287 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0061 K06677 - - csv:101221279 2463.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009093 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31