Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0068 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAAGAAGACGCACTTTTGGCCGGAGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTTAAAGATCCTGATTTCGCTCCCTCTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATTTGAGTGTCAGCACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCAGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAACCTCTGCTCCTGCTAAGTCCAATGCATCTGCTGATGCTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGCTGTGACATAGGTACGATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAGAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACTCCTAAACAAAAAGATGTCAGGCAACGGATATCGCAATACAACACTGCAGGAGGGGTGATGCAATCAGCAGAGACAGTGGAAGATGCAGCGAAAGCAGCTGCATACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATGTATGAAAAATGTTCTCGTGGTGAAATTATTCTCTTGGCTTAG 840 42.38 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAAPKAKAIVAAISNNQTSAPAKSNASADAAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYRVKKDNSLAVKTPTPKQKDVRQRISQYNTAGGVMQSAETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKCSRGEIILLA 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12021055 12025911 - PI0019145.1 Cmetu04g0068 352512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0068 279 SMART sant 4 59 IPR001005 -
Cmetu04g0068 279 Gene3D - 111 200 IPR036388 -
Cmetu04g0068 279 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu04g0068 279 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu04g0068 279 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cmetu04g0068 279 PANTHER SINGLE MYB HISTONE 4 1 278 IPR044597 GO:0003691
Cmetu04g0068 279 MobiDBLite consensus disorder prediction 1 27 - -
Cmetu04g0068 279 FunFam Telomere repeat-binding factor 1 8 88 - -
Cmetu04g0068 279 FunFam Telomere repeat-binding factor 1 2 58 - -
Cmetu04g0068 279 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cmetu04g0068 279 MobiDBLite consensus disorder prediction 87 114 - -
Cmetu04g0068 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cmetu04g0068 279 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cmetu04g0068 279 Gene3D - 8 87 - -
Cmetu04g0068 279 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Cmetu04g0068 279 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cmetu04g0068 279 CDD SANT_TRF 6 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0068 K09422 - - csv:101202785 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0068 Cmetu-Chr4:12021055 Cmetu07g0235 Cmetu-Chr7:367169 5.30E-30 dispersed
Cmetu04g0068 Cmetu-Chr4:12021055 Cmetu08g1550 Cmetu-Chr8:20287145 3.10E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0235 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 60.5 7.4e-78 287.7
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.5 5.7e-62 235.0
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.8 4.2e-65 245.4
Cmetu08g1550 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 5.4e-57 218.4
Cmetu04g0068 . 1 278 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.4e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7665 PF00538 Linker_histone 2.40E-10 CL0123 Cmetu TF