Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0229 ATGAATCCCGAATACGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCTTGTCTTCTACTGAGGTTTGCTGATGATTCGTATCTGGATAGCTACATTAGCACTATTGGAGTGGACTTTAAAATTCGTACTGTGGAACAGGATGGAAAGACAATTAAACTTCAGATTTGGGACACTGCCGGTCAAGAACGTTTCAGAACAATTACTAGCAGCTACTACCGTGGAGCTCATGGAATAATTGTCGTGTATGACGTTACAGATCAGGAGAGCTTCAATAATGTTAAGCAATGGTTGAATGAAATAGACCGATACGCAAGTGAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGATCTCACTGCAAATAAGGTCGTTTCTTATGAGACAGCCAAGGCTTTTGCGGATGAAATTGGGATTCCATTTATGGAAACAAGTGCTAAAAGCGCCACCAATGTGGAAGAGGCTTTCATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCAACACAACCGATGAACAACGCAAGGCCACCAACAGTGAATATTCGAGGACAACCTGTGAATCAGAAATCTGGTTGCTGCTCATCTTAA 609 41.71 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKSGCCSS 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33276143 33279456 + PI0028263.1 Cmetu04g0229 352673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0229 202 ProSiteProfiles small GTPase Rab1 family profile. 4 202 - -
Cmetu04g0229 202 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Cmetu04g0229 202 FunFam Small GTP-binding protein 2 200 - -
Cmetu04g0229 202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 180 IPR027417 -
Cmetu04g0229 202 Gene3D - 2 197 IPR027417 -
Cmetu04g0229 202 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
Cmetu04g0229 202 MobiDBLite consensus disorder prediction 182 202 - -
Cmetu04g0229 202 CDD Rab1_Ypt1 7 172 - -
Cmetu04g0229 202 ProSiteProfiles small GTPase Ras family profile. 1 202 IPR001806 GO:0003924|GO:0005525
Cmetu04g0229 202 SMART arf_sub_2 1 173 - -
Cmetu04g0229 202 PANTHER RAS-RELATED PROTEIN RAB 8 180 - -
Cmetu04g0229 202 ProSiteProfiles small GTPase Arf family profile. 2 178 - -
Cmetu04g0229 202 SMART rab_sub_5 9 172 - -
Cmetu04g0229 202 PRINTS Transforming protein P21 ras signature 147 169 - -
Cmetu04g0229 202 PRINTS Transforming protein P21 ras signature 9 30 - -
Cmetu04g0229 202 PRINTS Transforming protein P21 ras signature 112 125 - -
Cmetu04g0229 202 PRINTS Transforming protein P21 ras signature 50 72 - -
Cmetu04g0229 202 PRINTS Transforming protein P21 ras signature 32 48 - -
Cmetu04g0229 202 Pfam Ras family 10 170 IPR001806 GO:0003924|GO:0005525
Cmetu04g0229 202 SMART ran_sub_2 14 199 - -
Cmetu04g0229 202 NCBIfam small GTP-binding protein domain 7 164 IPR005225 GO:0005525
Cmetu04g0229 202 SMART ras_sub_4 6 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0229 K07874 - - csv:101209061 407.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0229 Cmetu-Chr4:33276143 Cmetu07g1630 Cmetu-Chr7:3468080 1.10E-104 dispersed
Cmetu04g0229 Cmetu-Chr4:33276143 Cmetu06g1969 Cmetu-Chr6:28998436 4.90E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g216 . . . . . . Bma06g00065 . . . . . . Car11g00283 Sed14g1022 . Cpe04g01374 Bhi02g00132 Tan09g1830 Cmetu04g0229 . Hepe09g0382 . . Cla06g01425 Cam06g1579 Cec06g1639 Cco06g1631 . Cmu06g1495 Cre06g2304 Cone2ag0759 . . . . . . . . . . . . . . . . . Cmo11g00313 . . . . . . . . . . . . . . . . . . . . . Csa01g00428 Chy02g02316 Cme02g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000372 4 4 3 4 4 4 6 4 4 4 4 4 4 3 4 5 4 7 6 4 4 4 4 4 3 3 4 5 6 2 125