Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0236 ATGCTCCAACAGCTTCTGTTTACGTATTTTACTGTCGTTGTCTATTCCACGATTCTGACTTCACTTGCTCGGGCGTTCACTAATCCGCCGGATGTTATAGCTCTTCAGGATTTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGCGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCAACCTCATCGATTTGAAGCAATTGGATGTTAGCTCTAATAGACTTACAGGTGAAATTCCGCACAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTATCTTACATGGGAAATCTCCGACATCTAAATCTTAGCCATAATACTCTATCTGGTGTTATTGGGAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATATTGCCAAGTTCATTTGGTTCCCTGACAAACGTCACTAGACTGTTCTTGCAGAATAATAAATTCACTGGATCAGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGAACATCCAAGACAATTATTTTAGTGGCATTATTCCAGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTTCGTCCAGAAGTCAATTCTCCACCCTGGGACTTTCCCCTAGAAAAAACACCTATGATGCAGAACATCAGTGGTCCTCCAACAACCAAGTCAAACGCCATCCAGAATTATCCCTCTCGGAGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCTGGTGGAATTGTTCTCCTGGTTGGTGGGTTAACACTAGTTGTAACCTTTGCAGCTCTCTTTTTCGTATTTGCCATGAAGCTTCATGAAAATAACATAAATTTGAAGATTGGGAATATATTACCCCGTTCTCTTCCTCTGGACAAAGCTGAAGATGATTCGTCTACTGCACCAGAAGAAAGCTCACGAAACTTTCCCTTGGGTTCTCTACTGATGGGTGTTCCAAGGCCTATGCCTTTATTAAATCACACGAGAACCGAGAAAGTATCTGGAAGAAAAGGTTTCTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAGTTTACACTCTGGCAGAGCTTCAATCCGCTACTAACAACTTTAGTCAAGAGAATCTTCTAGGAGTGGGATCTGTTGGTGCTGTTTATAGGGCTGAATTTCCCGATGGCCAAGTTTTGGCTGTGAAAAATATCAACATGGGAGCGCTCTCGTTTACAGAGGAAGAGCAATTTCTGGATGTGTTATGGACTGCTTCCCGTTTGAGGCACCCAAACATCGTTACGCTGCTTGGATATTGTGTAGAGCATGGACAATATATACTCGGATATGAATACGTTCGAAATCTTTCTCTTGATGAAGCTTTACACTGTGAAGCATACATGCCTTTGTCATGGACCGTCCGCCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTAAAAGCTGCCAATATCTTACTAGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGAGTAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGTGATAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGCATTTGATAATACGAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATGTGACAATTCGAAACCGAGGAAAGAGCAATTGTTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACACGAGTTTAGAACAGATGGTTGATCCAGGCATCAAAGGAACATTTTCCTGCAAGGCTCTCTCAAGCTTTGTCGATATTGTCTCCCTTTGTATACAGCCTGTGAAGGAATTTCGACCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAACGTGTTGCATCAGACGAAACTGAAGTGGTGAATCCTTTTGAGAAATCTTTTCGTTCTACCAACACTGGCTTTTGTCTATCAGAATTTAAAATTTACTATATTTTGTTAAATACTTTGATTTACTTTTAA 2202 41.37 MLQQLLFTYFTVVVYSTILTSLARAFTNPPDVIALQDLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSNLIDLKQLDVSSNRLTGEIPHNLPPNVTHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREILPSSFGSLTNVTRLFLQNNKFTGSVAYLSHLPLIDLNIQDNYFSGIIPENFRNIPNLWIGGNRFRPEVNSPPWDFPLEKTPMMQNISGPPTTKSNAIQNYPSRSVVRHEKKRLGPGGIVLLVGGLTLVVTFAALFFVFAMKLHENNINLKIGNILPRSLPLDKAEDDSSTAPEESSRNFPLGSLLMGVPRPMPLLNHTRTEKVSGRKGFSKRCRLPVRTKVYTLAELQSATNNFSQENLLGVGSVGAVYRAEFPDGQVLAVKNINMGALSFTEEEQFLDVLWTASRLRHPNIVTLLGYCVEHGQYILGYEYVRNLSLDEALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVSNRVKTKASEIVSGDRGYLAPEHGQPAFDNTRSDVYSFGVLLLELVTGRKPCDNSKPRKEQLLVKWASSRLHDNTSLEQMVDPGIKGTFSCKALSSFVDIVSLCIQPVKEFRPPMSEIVEHLTNLQRKMEMVKRVASDETEVVNPFEKSFRSTNTGFCLSEFKIYYILLNTLIYF 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6476293 6481674 + PI0010089.1 Cmetu04g0236 352680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0236 733 Gene3D Ribonuclease Inhibitor 31 112 IPR032675 -
Cmetu04g0236 733 Pfam Protein kinase domain 405 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g0236 733 Gene3D Transferase(Phosphotransferase) domain 1 482 707 - -
Cmetu04g0236 733 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cmetu04g0236 733 Gene3D Ribonuclease Inhibitor 113 168 IPR032675 -
Cmetu04g0236 733 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 369 481 - -
Cmetu04g0236 733 Pfam Leucine rich repeat 117 170 IPR001611 GO:0005515
Cmetu04g0236 733 SUPERFAMILY L domain-like 27 228 - -
Cmetu04g0236 733 Gene3D Phosphorylase Kinase; domain 1 367 481 - -
Cmetu04g0236 733 Gene3D Ribonuclease Inhibitor 169 266 IPR032675 -
Cmetu04g0236 733 SUPERFAMILY Protein kinase-like (PK-like) 381 681 IPR011009 -
Cmetu04g0236 733 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 268 693 - -
Cmetu04g0236 733 SMART LRR_typ_2 178 201 IPR003591 -
Cmetu04g0236 733 SMART LRR_typ_2 94 118 IPR003591 -
Cmetu04g0236 733 SMART LRR_typ_2 140 163 IPR003591 -
Cmetu04g0236 733 FunFam Leucine-rich repeat receptor-like protein kinase 482 691 - -
Cmetu04g0236 733 ProSiteProfiles Protein kinase domain profile. 404 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g0236 733 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0236 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0236 Cmetu-Chr4:6476293 Cmetu12g0052 Cmetu-Chr12:11171770 7.20E-127 dispersed
Cmetu04g0236 Cmetu-Chr4:6476293 Cmetu04g2239 Cmetu-Chr4:6484463 3.00E-149 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu12g0052 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.4e-84 311.2
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu04g3017 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 6.3e-216 747.7
Cmetu01g1056 . 1 714 Strubbelig Receptor Gene Family AT1G53730 61.2 9.4e-188 654.1
Cmetu03g1756 . 15 683 Strubbelig Receptor Gene Family AT1G53730 50.6 4.4e-153 538.9
Cmetu04g3017 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 2.5e-190 662.5
Cmetu01g1056 . 6 704 Strubbelig Receptor Gene Family AT3G14350 56.4 4.5e-171 598.6
Cmetu12g0052 . 138 711 Strubbelig Receptor Gene Family AT4G22130 61.9 1.0e-181 633.6
Cmetu04g3017 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.0 1.1e-119 427.6
Cmetu01g1056 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.8 3.4e-116 416.0
Cmetu01g1679 . 486 764 Strubbelig Receptor Gene Family AT4G22130 59.8 1.6e-102 370.5
Cmetu03g1756 . 351 697 Strubbelig Receptor Gene Family AT4G22130 53.4 2.4e-98 356.7
Cmetu04g2436 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.4 6.4e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70332 PF00069 Pkinase 8.00E-34 CL0016 Cmetu PK