Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0308 ATGGAACTTCAAGGAGGAAGGTCACTGGCTGAAACGCCTACCTGCTCGGTTGCTTCTGTGGTTACTGTCATGGTCTTTGTCTGCCTGGTGGTGGAGCGGGCAATCTATAGGTTTGGAAAGTGGTTGAAGAAGACCAAGAGAAAGGCTCTGTTTGCTTCTTGGAGAAGATCAAGGAAGCTACTAGCTGTTGGTCTGGCAATGAGTAAGGTACAAACTTTATACTAA 225 46.67 MELQGGRSLAETPTCSVASVVTVMVFVCLVVERAIYRFGKWLKKTKRKALFASWRRSRKLLAVGLAMSKVQTLY 74
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12518715 12520526 + PI0025947.1 Cmetu04g0308 352752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0308 74 PANTHER MLO-LIKE PROTEIN 1 5 64 IPR004326 GO:0006952|GO:0016020
Cmetu04g0308 74 Pfam Mlo family 7 56 IPR004326 GO:0006952|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0308 K08472 - - csv:101204236 95.9005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0308 Cmetu-Chr4:12518715 Cmetu04g1903 Cmetu-Chr4:12185046 1.20E-26 dispersed
Cmetu04g0308 Cmetu-Chr4:12518715 Cmetu04g1915 Cmetu-Chr4:12562748 2.90E-23 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1097 . . . . . . . . . . . . . . Sed04g1597 Cpe01g00825 Cpe14g00681 Bhi01g01590 Tan01g0784 Cmetu04g0308 . Hepe07g0512 Mch10g0552 . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . . . . . . Cme06g01218 . . . . . . . . . Cmo04g00973 . . . . . . . . . . . . . . . . . . . . . Lsi05g00163 . . .
Vvi19g246 Blo03g00649 Blo03g01542 Bda07g00291 . . Bpe08g01029 . . . . Cma01g01204 Cma09g00875 Car01g01028 Car09g00788 Sed04g1597 Cpe06g00699 . Bhi09g03403 Tan01g0784 Cmetu04g0308 . . . . Cla11g01772 Cam11g1837 Cec11g1858 Cco11g1866 Clacu11g1998 Cmu11g1807 Cre11g2216 Cone6ag0137 Cone9ag0162 . . Lsi04g01324 Csa04g02353 Chy07g00085 . . . . . Bpe11g00487 . Bma07g01182 . . Cmo01g01256 Cmo09g00864 Cma04g00535 . Car04g00505 . . . . . . . . . . Cla05g01024 Cam05g1118 Cec05g1128 Cco05g1118 Clacu05g1109 Cmu05g1058 Cre05g1133 . . Chy06g01139 .