Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0312 ATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCATTTGTGGCGACCAATGATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATTGAAAATCCACCCAATGATAAAGATCCTGTTGCCGCAAGCAATGCTGCACAGTCATCACGTTCTTCTGGACAGTCTCTCTCTAGGGCTCATGAATCTCCTCGGGGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGGAACTTTAATTCCAGTGCACCTTCTCTTGCTTCCAAACAGTATGAAGCCAGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTAAGTTACCGTTTATTATGCCCAACTGAGAGAGTTGGAAATGTGATTGGGAAAGGAGGAGCAATAGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAGAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGATGACAGAATATCACCAGTGCAAGATGCCGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCTGCAGCAGACAGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAAGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACGGGTGCATATATTCGTATTTTAGGAAAGGAACAGATTCCAAAGTGTGCTGGAGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCTTGAAACCGTTCAAGAAGCCATGTTTCAGATTACTACTCGGTTGAGGCATCATTTTTTCCGTGATGCTTTTCCATCAGTTAATAGTCATTCGAATCCTGCATTCATAGATAGATTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTATCGCCTCCAGGAATCTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGGCATTCCCTCACTCAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGCCCATCATAGAAGAGTTGCTGGATTTGGAGGAGGAAATAGTCCAGCTATTATTACGAGCACCACTGTTGAAGTGGTTGTTCCTCGAAACCTTGTCCCTGTTATTTGTGGAGAAAATGGGGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAGGGAGAAGTTGAAACTATGATTATAATTTCTGGAACACCCGAGCAGACCCATGCTGCTCAAAGTCTTATTCAAGCTTTTGTAATCAGCGAGACCGAGTCAAGTTGA 1458 43.83 MSSDSGAQIRILPRDKLPPFVATNDELVQISGGIDVVKKALELVFQQLIENPPNDKDPVAASNAAQSSRSSGQSLSRAHESPRGSSFNTHGGPYSVPRDVGNFNSSAPSLASKQYEASIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDIRVVEGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAAADSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGELETVQEAMFQITTRLRHHFFRDAFPSVNSHSNPAFIDRFPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRPGAPLLSDRKPWSSQGLVEGGVGLSDFAGAHHRRVAGFGGGNSPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQSLIQAFVISETESS 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31927022 31932282 - PI0007103.2 Cmetu04g0312 352756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0312 485 CDD KH-I_PEPPER_rpt1_like 132 197 - -
Cmetu04g0312 485 Gene3D K Homology domain, type 1 130 205 IPR036612 GO:0003723
Cmetu04g0312 485 MobiDBLite consensus disorder prediction 52 107 - -
Cmetu04g0312 485 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 131 205 IPR036612 GO:0003723
Cmetu04g0312 485 Pfam KH domain 132 183 IPR004088 GO:0003723
Cmetu04g0312 485 Pfam KH domain 217 283 IPR004088 GO:0003723
Cmetu04g0312 485 Pfam KH domain 412 475 IPR004088 GO:0003723
Cmetu04g0312 485 Gene3D K Homology domain, type 1 408 481 IPR036612 GO:0003723
Cmetu04g0312 485 MobiDBLite consensus disorder prediction 60 92 - -
Cmetu04g0312 485 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 293 IPR036612 GO:0003723
Cmetu04g0312 485 ProSiteProfiles Type-1 KH domain profile. 410 474 - -
Cmetu04g0312 485 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 407 480 IPR036612 GO:0003723
Cmetu04g0312 485 SMART kh_6 128 204 IPR004087 GO:0003676
Cmetu04g0312 485 SMART kh_6 409 479 IPR004087 GO:0003676
Cmetu04g0312 485 SMART kh_6 213 288 IPR004087 GO:0003676
Cmetu04g0312 485 ProSiteProfiles Type-1 KH domain profile. 129 196 - -
Cmetu04g0312 485 CDD KH-I_PEPPER_rpt2_like 216 288 - -
Cmetu04g0312 485 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 104 - -
Cmetu04g0312 485 Gene3D K Homology domain, type 1 211 291 IPR036612 GO:0003723
Cmetu04g0312 485 Gene3D K Homology domain, type 1 1 53 IPR036612 GO:0003723
Cmetu04g0312 485 ProSiteProfiles Type-1 KH domain profile. 214 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0312 K21444 - - csv:101221201 913.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1823 Cmetu-Chr1:27966591 Cmetu04g0312 Cmetu-Chr4:31927022 3.90E-53 dispersed
Cmetu04g0312 Cmetu-Chr4:31927022 Cmetu09g1584 Cmetu-Chr9:19903933 3.50E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35