Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0392 ATGGCGCCTAGTACGATCCGAAAGGCGGTCGGAGCTCTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATATGGCGCCGGACCTTGAGGTGGCGATTGTGAAGGCGACGAGTCATGATGATGATCCGGCGAGTGAGAAGTACATCAGGGAGATTTTGAGCTTGACATCTTATTCTCGTGGATATGTGAGTGCGTGTGTTTCGGCGATTTCGAAGCGTTTGGCTAAGACGAGGGATTGGATTGTGGCGCTCAAGGCGCTCATACTTGTGCATAGATTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCTACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGATTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTGTTCGAACTTATGCATTCTACTTGGATCAACGGCTGGAATTGATGTTGTTTGAGAAGAAAGGTGGTAGTGCAAGGGGAAATTCCCGTGGGGATGATAGATTTGAAGGAAGAGATGACTTTAGATCTCCACCTCCAAGGCCTTTCGATAACGGTTATGGCGAGTATAGGGGAGAAAGAGAGTATGGAAACTATGGCGGGATGAGGAGGTCTAGATCTTATGGTGATGTGGGTGAGTCTATGGGGAGGGACGGCCAGGGGCAGGGGCAGGGGCGTAACAACAAGGGGCCTGTGACTCCGTTGAGGGAAATGACGATCGAGAGAGTTTTCGGTAAGATGGGACATTTGCAGAGACTATTGGATAGATTCTTGTCGTGTCGACCAACGGGGTTGGCGAAGAATAGTAGGATGATTTTGTATGCTTTGTACCCTCTAGTGAGGGAAAGTTTTCAATTGTATGCAGATATTTGTGAGGTTTTGGCTGTTTTGCTCGACAAATTCTTTGATATGGAGTATTCTGACTGTATGAAGGCATTTGATGCTTATGGTAGCTCAGCCAAGCAGATCGATGAGCTAATTGCATTCTATAATTGGTGTAAAGATACAGGCGTTGCTAGATCCTCTGAGTATCCTGAGGTGCAGAGAATCACCAGCAAGTTACTTGAAACATTGGAGGAGTTTTTGAGGGAAAGAGGGAAGAGGCCAAAGAGTCCCGAGAGAGAGCCACCTCCACCTGCGCCTGAAGAGGAAGAACCGGCACCTGATATGAATGAGATTAAAGCTCTTCCTCCACCTGAAAATTACACTCCACCTCCGCCCGAGCCCGAGCCCCAGCCTGCGCCTAAACCTCAACCACAAGTCACGGATGACTTGGTCAATCTGAGAGATGATGCAGTTAGTGCAGATGATCAAGGTAATAAACTGGCGTTGGCTCTGTTTGCTGGTCCAGCAGCTAATGGTGCAAACGGATCCTGGGAAGCTTTCCCTTCCGATGGACAGCCAGAAGTAACCTCTGCCTGGCAGACCCCGGCGGCTGAATCTGGCAAAGCGGATTGGGAGTTAGCTTTGGTTGAGACAGCAAGCAATTTATCAAGGCAGAAAGCAGCACTTGGTGGTGGACTCGACCCATTGTTGTTAAATGGCATGTATGATCAAGGAATGGTTAGGCAGCACACTAGCACTGCACAGCTGAGCGGTGGAAGCGCAAGCAGTGTAGCTTTGCCTGGTCCCGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCAGATGGAACTGTCCAGGCAGTGAATCAGGATCCTTTTGCAGCATCGTTAAGCGTTCCACCTCCTTCTTATGTGCAAATGGTGGAGATGGAGAAGAAACAGCATCTGCTTATGCAGGAACAGCAGGTATGGCAGCAGTATGCAAGAGATGGGATGCAAGGGCAGAGCAGTTTGAACAAAATCAGTAACCCCCCTGGTTACTACAACACGGGCGTGGCACCAATGGCTCCGATGCCCTACGGAATGCCTCCGATGAACGGAATGGGCGGGTATTACTATGTTCCTCAATGA 1968 49.34 MAPSTIRKAVGALKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVSAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAFYLDQRLELMLFEKKGGSARGNSRGDDRFEGRDDFRSPPPRPFDNGYGEYRGEREYGNYGGMRRSRSYGDVGESMGRDGQGQGQGRNNKGPVTPLREMTIERVFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSSAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKRPKSPEREPPPPAPEEEEPAPDMNEIKALPPPENYTPPPPEPEPQPAPKPQPQVTDDLVNLRDDAVSADDQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAESGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHLLMQEQQVWQQYARDGMQGQSSLNKISNPPGYYNTGVAPMAPMPYGMPPMNGMGGYYYVPQ 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30076422 30078389 + PI0010849.1 Cmetu04g0392 352836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0392 655 Pfam ANTH domain 31 367 IPR011417 GO:0005543
Cmetu04g0392 655 MobiDBLite consensus disorder prediction 401 421 - -
Cmetu04g0392 655 FunFam putative clathrin assembly protein At2g25430 232 377 - -
Cmetu04g0392 655 Gene3D - 2 155 IPR008942 -
Cmetu04g0392 655 MobiDBLite consensus disorder prediction 160 193 - -
Cmetu04g0392 655 SMART enth_2 30 160 IPR013809 -
Cmetu04g0392 655 FunFam Clathrin coat assembly protein 3 156 - -
Cmetu04g0392 655 MobiDBLite consensus disorder prediction 365 384 - -
Cmetu04g0392 655 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 598 IPR045192 GO:0048268|GO:0072583
Cmetu04g0392 655 MobiDBLite consensus disorder prediction 210 235 - -
Cmetu04g0392 655 MobiDBLite consensus disorder prediction 365 425 - -
Cmetu04g0392 655 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Cmetu04g0392 655 CDD ANTH_N_AP180_plant 32 152 - -
Cmetu04g0392 655 MobiDBLite consensus disorder prediction 160 182 - -
Cmetu04g0392 655 SUPERFAMILY GAT-like domain 237 367 - -
Cmetu04g0392 655 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Cmetu04g0392 655 Gene3D ANTH domain 229 374 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1163 Cmetu-Chr1:2149438 Cmetu04g0392 Cmetu-Chr4:30076422 3.50E-121 transposed
Cmetu02g1963 Cmetu-Chr2:19679709 Cmetu04g0392 Cmetu-Chr4:30076422 1.70E-51 transposed
Cmetu05g0504 Cmetu-Chr5:20719817 Cmetu04g0392 Cmetu-Chr4:30076422 4.70E-65 transposed
Cmetu05g0605 Cmetu-Chr5:5967474 Cmetu04g0392 Cmetu-Chr4:30076422 5.20E-59 transposed
Cmetu10g0165 Cmetu-Chr10:6287637 Cmetu04g0392 Cmetu-Chr4:30076422 2.00E-63 transposed
Cmetu10g0390 Cmetu-Chr10:10236942 Cmetu04g0392 Cmetu-Chr4:30076422 1.60E-21 transposed
Cmetu02g1233 Cmetu-Chr2:19899194 Cmetu04g0392 Cmetu-Chr4:30076422 1.40E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81