Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0475 ATGCCTCTGAGAGGCATAATTCGTGAGAAGACTGAAATACGCGAAAGCAGTGGGAATTCATCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTTCCAGAACAGCCTTCTTCTTCATCTTTTCCGGTTCCGGTTGAACAGAGCCGTTGGGCGAATTTACCTCCGGAGCTTCTTTTGGACGTAATTCAACGAGTGGAAGGGAGTGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCTTGTGCTTCAGTTTGCAGGTCATGGCGGATAATTACAAAGGAAGTCGTTAGGACTCCTGAACAGTGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATCCGACGAGCAATGAGTACAGAGTTCATTATATCATTGGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACTTGGGAAAGCTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCTCATGACCCAAAATTGCGAAGCAGTAGATCAAAAAGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACCAGAGGTCCAAGAAGAATGCGATGCACCATGCATTCAATACCTGTTGCGTCCGTGGAGGAGGGTGGCACTGCCCCAACTCCGACAGAGTTTAAAGACTGTATCAATGAGTATCATTCCTCAACACCACTTTCCAAAGGAAAGAAGGCAATAACCGAGTCCCCAACTGAGTCCCCCGACTTTCAAGAATCGGTAGCTCCATTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACAGTCGCCTCAGTGAAGAACTTCCAGCTGGTTGCCGCTGCGGAGACGAGTCAAAATGTATCGGCAGCCGAACAAGAGAGAGTTATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACGAAGCCAGCCTGTGAATGA 1236 46.6 MPLRGIIREKTEIRESSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPVEQSRWANLPPELLLDVIQRVEGSETSWPSRRDVVACASVCRSWRIITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTEFIISLVPDDFSRASNNYLGKLRSNFLGTKFSIYDSQPPHDPKLRSSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVASVEEGGTAPTPTEFKDCINEYHSSTPLSKGKKAITESPTESPDFQESVAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29063495 29066841 - PI0020087.1 Cmetu04g0475 352919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0475 411 Pfam F-box domain 57 104 IPR001810 GO:0005515
Cmetu04g0475 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Cmetu04g0475 411 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cmetu04g0475 411 SUPERFAMILY F-box domain 44 100 IPR036047 GO:0005515
Cmetu04g0475 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Cmetu04g0475 411 Gene3D - 52 105 - -
Cmetu04g0475 411 MobiDBLite consensus disorder prediction 14 47 - -
Cmetu04g0475 411 SUPERFAMILY Tubby C-terminal domain-like 106 411 IPR025659 -
Cmetu04g0475 411 MobiDBLite consensus disorder prediction 14 32 - -
Cmetu04g0475 411 PANTHER TUBBY-RELATED 31 409 - -
Cmetu04g0475 411 CDD F-box_AtTLP-like 57 101 - -
Cmetu04g0475 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Cmetu04g0475 411 Pfam Tub family 118 406 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0475 K19600 - - csv:101222500 803.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0475 Cmetu-Chr4:29063495 Cmetu06g0547 Cmetu-Chr6:9726551 4.30E-121 dispersed
Cmetu04g0475 Cmetu-Chr4:29063495 Cmetu07g1219 Cmetu-Chr7:4599524 2.00E-150 wgd
Cmetu04g0475 Cmetu-Chr4:29063495 Cmetu08g0022 Cmetu-Chr8:21685910 3.40E-142 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT1G76900 73.4 1.9e-178 622.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 1.6e-169 592.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT1G76900 69.3 6.2e-169 590.9
Cmetu11g1152 . 13 386 TUB Transcription Factor Family AT1G76900 50.6 4.4e-114 408.7
Cmetu06g0547 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.6e-102 367.1
Cmetu03g0268 . 173 430 TUB Transcription Factor Family AT1G25280 69.4 4.6e-95 344.7
Cmetu03g0406 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.1e-93 340.1
Cmetu06g1321 . 214 447 TUB Transcription Factor Family AT1G25280 53.9 1.0e-70 263.8
Cmetu07g1219 . 177 414 TUB Transcription Factor Family AT1G25280 55.8 3.0e-70 262.3
Cmetu04g0475 . 180 411 TUB Transcription Factor Family AT1G25280 53.4 6.2e-68 254.6
Cmetu11g1152 . 154 386 TUB Transcription Factor Family AT1G25280 53.6 5.2e-67 251.5
Cmetu08g0022 . 176 414 TUB Transcription Factor Family AT1G25280 51.7 1.2e-63 240.4
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT5G18680 62.8 5.8e-99 357.8
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT5G18680 62.8 3.2e-97 352.1
Cmetu03g0268 . 112 430 TUB Transcription Factor Family AT5G18680 53.4 2.8e-85 312.4
Cmetu03g0406 . 112 432 TUB Transcription Factor Family AT5G18680 51.8 3.4e-83 305.4
Cmetu06g0547 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.3e-82 303.5
Cmetu07g1219 . 115 414 TUB Transcription Factor Family AT5G18680 52.5 3.0e-79 292.4
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G18280 61.9 3.5e-144 508.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G18280 59.8 1.1e-134 476.9
Cmetu04g0475 . 1 411 TUB Transcription Factor Family AT2G18280 60.2 6.6e-127 451.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 3.0e-119 425.6
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 8.1e-117 417.5
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G18280 54.3 1.4e-116 416.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.2e-112 403.7
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G18280 52.7 1.8e-111 399.8
Cmetu07g1074 . 48 379 TUB Transcription Factor Family AT2G18280 50.7 3.0e-95 345.9
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G47900 68.5 1.6e-160 562.8
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G47900 67.7 9.8e-158 553.5
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G47900 55.7 1.9e-132 469.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.0e-130 463.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 1.7e-130 463.0
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G47900 56.4 1.0e-122 437.2
Cmetu04g0475 . 10 411 TUB Transcription Factor Family AT2G47900 55.5 1.9e-116 416.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G47900 51.3 9.6e-113 404.1
Cmetu07g1074 . 49 379 TUB Transcription Factor Family AT2G47900 51.0 8.5e-101 364.4
Cmetu01g1579 . 82 297 TUB Transcription Factor Family AT1G16070 63.2 7.5e-75 277.7
Cmetu03g0268 . 67 430 TUB Transcription Factor Family AT1G43640 70.6 8.2e-148 520.4
Cmetu06g0547 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.0e-145 513.5
Cmetu03g0406 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 1.5e-141 499.6
Cmetu06g1321 . 109 447 TUB Transcription Factor Family AT1G43640 53.4 2.3e-105 379.4
Cmetu11g1152 . 47 386 TUB Transcription Factor Family AT1G43640 51.9 2.3e-105 379.4
Cmetu04g0475 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 2.4e-99 359.4
Cmetu08g0022 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 4.0e-94 342.0
Cmetu04g0475 . 34 411 TUB Transcription Factor Family AT1G47270 63.1 1.2e-133 473.4
Cmetu07g1219 . 34 414 TUB Transcription Factor Family AT1G47270 58.0 1.3e-122 436.8
Cmetu08g0022 . 33 414 TUB Transcription Factor Family AT1G47270 56.6 2.7e-120 429.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.7e-114 409.8
Cmetu03g0268 . 30 430 TUB Transcription Factor Family AT1G47270 51.7 2.0e-112 402.9
Cmetu03g0406 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.5e-112 402.1
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT1G47270 51.0 3.1e-108 389.0
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT1G47270 50.2 2.7e-104 375.9
Cmetu07g1074 . 1 379 TUB Transcription Factor Family AT1G53320 71.1 3.3e-155 545.0
Cmetu07g1219 . 20 414 TUB Transcription Factor Family AT1G53320 50.9 4.9e-103 371.7
Cmetu11g1152 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 4.9e-103 371.7
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT3G06380 63.8 3.1e-97 352.1
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT3G06380 62.1 1.4e-94 343.2
Cmetu06g0547 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 6.2e-82 301.2
Cmetu03g0268 . 116 430 TUB Transcription Factor Family AT3G06380 51.6 9.0e-81 297.4
Cmetu03g0406 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.6e-80 295.8
Cmetu07g1219 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 4.5e-80 295.0
Cmetu04g0475 . 120 411 TUB Transcription Factor Family AT3G06380 51.8 4.2e-78 288.5
Cmetu08g0022 . 118 414 TUB Transcription Factor Family AT3G06380 50.2 9.6e-75 277.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7695 PF01167 Tub 3.20E-106 CL0395 Cmetu TF