Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0493 ATGCCAGAAGTTTGGTGTACTCTGAAGAGATCATTATCCTGCACCAAATCATTCCTTTGTGATGATGTTCATGAACCAGAACCGATTAGAGATTCAAACTCCAAGGAAAGAACAGAACGAGATTCATCTGGATGTTTAAGGTCCAAATCTAACCTTAGAGACATCATTTGTGGAAGCAAAAGACACTCACAGAAGCCATCGCCAAGATCGAGCTCGAGATCGATGGCGATGAGTGAAGTTCTCCACACCATGATCCATGAAATTGAATCCCAAATTAAAAGAGATAACTTCTTTGTTCCTCATGAAGAGAAACCCCGTCTTAAACTCCACAAAATTTCTGTTACAAGAAATAGCCATGCCTATTCTGCAACTTCTCATATCCAATTCAATGATGGCTATGAATTGATTTGCCAAGAATGTGGTGGGGTTTTTAAGAACTCGGATGCACTGGAGTCGCATCATCTTTCCAAGCATGCTGTGAGAGAATTATTACAGGGGGATTCATCAAGGAAAGTGATAGAACTAATCTGCAAAAGAAATTGGCAAATGTCAAAATCCCATCACATTGAGAAGGTTTTCAAAGTCCAAAATTCCCCAAGAACTCAGTCTCTGTTTGAAGAATACAGAGAAATGGTGAAAACCAAAGCGAGAGAACTGGAGAATGAAAACCCACGTTGCATAGTCGATGGAAACGAGCTCTTGAGGTTTCATGGCGCAACGATTGCTTGCTCATTATCGGCCGCCGATGGTTCTCAGATTCTATGCAATTTAGTGAACTGTGGAGTTTGCCAAATTTTAAGACATGGGTTTAATGGCGCGTTTACTTGTGCAACGAGTGGAAAAGCCTATGAAGGTATTGCGATGAATGAAGAAGATGTGAGGTTAAGAAGAGCTTTAATGGTGTGCAGAGTGATTGCAGGGAGGATTGAGGAAGATGAAGAGAATGATAATTCCGGGTTGGATTCGTCGGGTGGGAAAACGGGTCGGAGTTCGAAACGGGAAGAGCTTTATGTCTTCGAGTCTAAAGCTGTACTTCCTTGCTTCGTGGTAACTTTCAAACGCTAA 1065 41.78 MPEVWCTLKRSLSCTKSFLCDDVHEPEPIRDSNSKERTERDSSGCLRSKSNLRDIICGSKRHSQKPSPRSSSRSMAMSEVLHTMIHEIESQIKRDNFFVPHEEKPRLKLHKISVTRNSHAYSATSHIQFNDGYELICQECGGVFKNSDALESHHLSKHAVRELLQGDSSRKVIELICKRNWQMSKSHHIEKVFKVQNSPRTQSLFEEYREMVKTKARELENENPRCIVDGNELLRFHGATIACSLSAADGSQILCNLVNCGVCQILRHGFNGAFTCATSGKAYEGIAMNEEDVRLRRALMVCRVIAGRIEEDEENDNSGLDSSGGKTGRSSKREELYVFESKAVLPCFVVTFKR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2538512 2539657 - PI0027804.1 Cmetu04g0493 352937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0493 354 ProSitePatterns Zinc finger C2H2 type domain signature. 137 158 IPR013087 -
Cmetu04g0493 354 Gene3D - 158 354 - -
Cmetu04g0493 354 SUPERFAMILY ADP-ribosylation 161 353 - -
Cmetu04g0493 354 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 351 - -
Cmetu04g0493 354 ProSiteProfiles Zinc finger C2H2 type domain profile. 135 163 IPR013087 -
Cmetu04g0493 354 MobiDBLite consensus disorder prediction 25 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0493 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0493 Cmetu-Chr4:2538512 Cmetu06g0025 Cmetu-Chr6:24781103 4.40E-53 dispersed
Cmetu04g0493 Cmetu-Chr4:2538512 Cmetu04g3104 Cmetu-Chr4:25147411 7.20E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g410 Blo03g00587 . Bda07g00334 . Bpe09g00200 . . Bma13g01021 . . Cma01g01157 Cma09g00919 . Car09g00835 Sed07g1906 . . Bhi09g01955 Tan01g4499 Cmetu04g0493 . Hepe01g1317 Mch11g1146 . . . . . . . . . Cone9ag0108 Cone14ag1118 Cone15ag1134 Lsi04g01251 . Chy04g01022 . . Blo10g00801 . Bda12g00882 Bpe11g00520 . . Bma14g00361 . Cmo01g01211 Cmo09g00914 . . Car04g00864 Car16g00569 . . . . . . . . . Cla05g01547 Cam05g1655 Cec05g1659 Cco05g1697 Clacu05g1646 Cmu05g1541 Cre05g1652 . . . Cme04g00792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013985 0 1 0 0 0 1 1 1 1 0 0 1 1 1 1 1 1 0 0 1 1 1 2 1 3 1 1 2 0 0 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7698 None None None None Cmetu TF