Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0638 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTATTGATTATTCATCTTCGCCATTGTTGAGAGGAAGTAAATCGTCGTTGTTTTGGGGAAGAGATTTATGCTTTGGAAATGGAGGTATTAGGGATGGTCCGAGAGCGAAAGCTTCATTCAATGTTCGAGTTCTTAAGGTTTTCTCCATGTCGGATAGTTCTTCTTCATCGTTTAAGATGAATCTCAATGAATACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTTGCGATTTCTGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTAAAGAAGGCAAGCGATTCATCAGGCGTCAATCTCATTGAGATTAAGGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAACAGGATCTTTTAGCCTGGTTCTTGAAAGACCTTTTTCTCCTTTTCCTATTCAACAGCTTCTACTTTCAAACGATTTAGATATTTTATTTAATAGAGGTCGAGTGCCTATTGCTACTTGGAAGAAAGAAATTTTGGCATCAAATTTACAAACATCTGATGAAAGCAGTAAGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTTAACATCAGAAGGTCTGAAACTTCTTAGAGATCAAAATGAAGATGTAAAATCACATATACAGAAAAACATTCTCACGCCTCAAATCGGCCAACTTGTTGGTATATTTACTGAAGATGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTAGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGCTATATTATGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATCTATGTGGGGTCATGTATACAGACTGAAGCAGACGTTGAGGCTTTGTCAAATAACGTGGGAGTCACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGTTAATCAACGAGTCGTGCCAAAAATTTGATATTCTCATGATCAACTATCCTATCAGGGAAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTACGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACCTCTGGTTTTGATCGATCTCCAGCCAGTGTGATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCTGCAAACCTGACAGGCCTGCTATCGCTTGGGCTACCTGGGATCTCATAGCAATGGTGGAAAATGGAAGGCATGATGGACCACCCACACATGCCGTCACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGCGATTTTACTGGTAACTGGAAAGAACCGGTGATGGCTAGTCACAAGGGTGGACCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTACTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCCGCTGAAAGAGACGATAGGGGGAATGTCAACAATGTAATAGTCATCGGTGACACTGCCAGTGTTAGGCCTTCAGTTCAGCCGCAAAAGAAAGATGCAAATATCGTGAAGGTAATTGAAAGACCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGGTGTGTCGCATTTTCAGTATGTCCAATTAGACTAACTCCCAAGTAG 1770 41.86 MAVLQLPCVRIIDYSSSPLLRGSKSSLFWGRDLCFGNGGIRDGPRAKASFNVRVLKVFSMSDSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVNLIEIKDFGDTQMMLKEKTGSFSLVLERPFSPFPIQQLLLSNDLDILFNRGRVPIATWKKEILASNLQTSDESSKNSGFATFSSKFLTSEGLKLLRDQNEDVKSHIQKNILTPQIGQLVGIFTEDEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALSNNVGVTAVLNFQGATEAENWGINSKLINESCQKFDILMINYPIREGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSCKPDRPAIAWATWDLIAMVENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVMASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9397579 9402863 - PI0002043.1 Cmetu04g0638 353082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0638 589 Pfam Dual specificity phosphatase, catalytic domain 298 421 IPR000340 GO:0008138|GO:0016311
Cmetu04g0638 589 Gene3D Immunoglobulins 443 539 IPR013783 -
Cmetu04g0638 589 Gene3D Protein tyrosine phosphatase superfamily 282 548 IPR029021 -
Cmetu04g0638 589 CDD DSP_laforin-like 288 434 IPR045204 GO:0019203
Cmetu04g0638 589 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 281 427 IPR029021 -
Cmetu04g0638 589 SUPERFAMILY E set domains 453 536 IPR014756 -
Cmetu04g0638 589 ProSiteProfiles PDZ domain profile. 76 157 IPR001478 GO:0005515
Cmetu04g0638 589 CDD E_set_AMPKbeta_like_N 456 535 - -
Cmetu04g0638 589 SUPERFAMILY PDZ domain-like 57 162 IPR036034 GO:0005515
Cmetu04g0638 589 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 19 586 - -
Cmetu04g0638 589 ProSiteProfiles Dual specificity protein phosphatase domain profile. 289 448 IPR020422 GO:0006470|GO:0008138
Cmetu04g0638 589 Pfam Glycogen recognition site of AMP-activated protein kinase 456 537 IPR032640 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0638 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35