Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0645 ATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGAAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGTTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGTGATGACGGTGAAACGGGTTTCAAGAGCGATTTCGCCGGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGTCTGATTCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGCAACTGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACGTGTGGGTACAAGCTACAGCTGCTGCTCAAGGTGTAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTAAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCTATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACATCAAATGGCAATCAAAACCGACCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAACAGAAGGACAACCACGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAGCAAGATAACTTCAAGTGCTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGACTCGGTCACAGAAATCCACACCTAAAATCTGGAGGCTTCAACCGGCATTGGGCAAATGGGCGGCGTTAG 1362 44.64 MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAAQGVEVTPDSKNKSAAVKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGNQNRPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRPQKLSTEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHLKSGGFNRHWANGRR 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7305086 7308596 + PI0022770.1 Cmetu04g0645 353089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0645 453 CDD TFIIS_I 143 215 - -
Cmetu04g0645 453 MobiDBLite consensus disorder prediction 356 383 - -
Cmetu04g0645 453 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 226 IPR035441 -
Cmetu04g0645 453 MobiDBLite consensus disorder prediction 288 355 - -
Cmetu04g0645 453 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Cmetu04g0645 453 SMART TFS2_5 141 216 IPR003617 GO:0005634
Cmetu04g0645 453 MobiDBLite consensus disorder prediction 429 453 - -
Cmetu04g0645 453 Coils Coil 393 420 - -
Cmetu04g0645 453 MobiDBLite consensus disorder prediction 227 259 - -
Cmetu04g0645 453 MobiDBLite consensus disorder prediction 273 383 - -
Cmetu04g0645 453 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 441 IPR044805 -
Cmetu04g0645 453 Coils Coil 312 332 - -
Cmetu04g0645 453 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 222 IPR035441 -
Cmetu04g0645 453 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0645 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0645 Cmetu-Chr4:7305086 Cmetu08g0092 Cmetu-Chr8:18673464 1.20E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1212 . . Bda04g00345 . . . Bma09g00240 . . . Cma03g01070 Cma07g00779 Car03g00964 Car07g00767 Sed14g0207 Cpe19g00546 Cpe10g00356 Bhi03g01399 Tan03g1346 Cmetu04g0645 . Hepe04g1136 . . Cla01g01539 Cam01g1610 Cec04g1256 Cco04g1328 Clacu01g1636 Cmu01g1523 Cre04g1201 . . . . Lsi01g01123 . . . . . . . . Bpe06g00282 . . . Cmo03g01065 Cmo07g00803 . . . . . . . . . . . . . . . . . . . . . Csa06g02814 Chy02g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005034 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7704 PF08711 Med26 1.30E-11 No_clan Cmetu TR