Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0673 ATGCTTAGCCGTATTCATCAATGGAAGCCATTACATTTTCTCAGGAAATGCGGGATACTCGCTTCTTTTAGTTCTGTCATCCTTGCTAGGCCTTCAGTTTCAGTTTCTGCCGCCCGGCTTGAACCGGCAACCGTAACTACCTCGTTTGTTCCGGATCAGAACGGCCCAGTTCATGAAATTCTCACAGGTTTGAATTCCCTTGGGTTTAGAGACTACGTTGGTGGATGTAACTTTCGAACTCTTGTTTCTACTTTGAGTGAAACTGCAGTGGATGGCGTTCTTGATTGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTTTTAAGAAACGACTACGGATTTCGGCATTCTGGATTCTCTCAGTTTGTTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCATTTGCTTGAGGAGCAAGGGTTGGGTTCTGCGTCTACTTTTTGTGACCTGCTCTTGAACAAATTCAGGAACTGGGATTCAAATGGTGTGGTATGGGATATGCTGGCATTTGCGTACTCTAGACATGAAATGATCCACGATGCCCTCTTTGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGGATGTATATAATGAGATCAAAGTTAGTGGAGCTCCTCAGAGTGAATACACTACCTCAATACTTATACACGGTCTATGTGAGCAATCCAAGTTAGAAGATGCGATTTCATTTCTACAGGATAGCAATGAAGTTGTTGGACCTTCTATTGTGTCTATCAATACCATTATGTCAAAGTTTTGCAAAGTGGGACTGATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTCAAGAATGGACTTCTTCATGATTCCTTCAGTTATAATATTCTTCTTCATGGGTTATGTGTAGCCGGTTCCATGGACGAAGCTCTGGGATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTTGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCGTAAAGTTGTCCATAAAATGTTGCTGAAAGGTTTAAATCCAGATCTTGTTACATATACAATACTGATGTGTGGATATTGTCAGATGGGAAATATTGAGGAAGCTCTGAAACTGCGGCAAGAAACTCTTTCGAGGGGGTTTAAGTTGAATATCATTTCCTACAGTGTTCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGTTTGATGAAATAGAAACTCTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGTTTATGCAAGGAAGGGTTCGTACAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCACACTACTTTGCTCAGCGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAATTATTTTGATACTTGGACACGCATGGATTTGATAGAGGATGTTGTATTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTACAAAATGATTGAAAGGGGGATCACTCCTAGTGTTGTCACTTTCAACACCCTTATCAATGGATTCTGCAGAAGAGGAGACCTAATGGAGGCTCGAAAGATGTTGGAAGTCATCAGGTTGAAAGGATTGGTACCTAGCGTGGTAACTTATACTACCCTTATGAACGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATTTTCTTCATGAGATGGAAGCAAACGCTGTTGTTCCAACTCATGTAACTTATACTGTACTAATCAAAGGACTTTGCAGACAAAATAAGATGCATGAATCCCTCTGGTTGCTAGAGTATATGTATGCAAAGGGTCTAGTGCCAGATTCAGTCACATATAACACTATTATCCAATGTTTTTGCAAGGGAAAAGACATTACCAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAATGTACTTGTTAACGGTCTTTGTATATATGGTGACCTGAAGGATGTTGATCGAATGGCAGTTTCTATGGAGGATCGAAATATTACCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAGGGGTCAGGTCTCTAAAGCATTAGGGTACTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTGTCATTAATCGGCTTTGCAAAAGGGGTCTAATTACTGAAGCAAAGTACATTTTTGTTGTGATGTTATCTGAAGGCGTAACTCCTGATCCTGAAATTTGTGAGACAGTGCTTAATGCTTTCCATCAACAGGGTGATAACAGTTCAGTGTTTGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATTGA 2508 39.11 MLSRIHQWKPLHFLRKCGILASFSSVILARPSVSVSAARLEPATVTTSFVPDQNGPVHEILTGLNSLGFRDYVGGCNFRTLVSTLSETAVDGVLDCLRTQNPDVAVAFFYFLRNDYGFRHSGFSQFVVSHILAGKGRFKELHSVIKHLLEEQGLGSASTFCDLLLNKFRNWDSNGVVWDMLAFAYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWDVYNEIKVSGAPQSEYTTSILIHGLCEQSKLEDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVHKMLLKGLNPDLVTYTILMCGYCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLFDEIETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPHYFAQRAVLLGLFENGNISEARNYFDTWTRMDLIEDVVLYNIMIDGYVRLGDIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLWLLEYMYAKGLVPDSVTYNTIIQCFCKGKDITKAFQLYNKMLLHNLDPTHVTYNVLVNGLCIYGDLKDVDRMAVSMEDRNITLTKVAYMTIIKAHCARGQVSKALGYFNQMLAKSFVISIRDYSAVINRLCKRGLITEAKYIFVVMLSEGVTPDPEICETVLNAFHQQGDNSSVFEFLAMVVKSGFISH 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16180739 16183488 + PI0019770.1 Cmetu04g0673 353117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 337 408 IPR011990 GO:0005515
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 222 336 IPR011990 GO:0005515
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 723 834 IPR011990 GO:0005515
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat 769 797 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat 732 760 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat 278 307 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 277 309 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 662 695 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 697 729 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 312 346 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 382 415 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 732 765 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 592 625 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 627 661 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 452 484 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 522 555 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 557 591 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 769 800 IPR002885 -
Cmetu04g0673 835 NCBIfam pentatricopeptide repeat 347 380 IPR002885 -
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 81 221 IPR011990 GO:0005515
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 481 574 IPR011990 GO:0005515
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 660 694 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 729 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 659 IPR002885 -
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 653 722 IPR011990 GO:0005515
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 579 652 IPR011990 GO:0005515
Cmetu04g0673 835 Gene3D Tetratricopeptide repeat domain 409 480 IPR011990 GO:0005515
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat 447 477 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat family 310 356 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat family 379 428 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat family 659 707 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat family 520 568 IPR002885 -
Cmetu04g0673 835 Pfam PPR repeat family 589 638 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Cmetu04g0673 835 SUPERFAMILY HCP-like 385 560 - -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cmetu04g0673 835 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Cmetu04g0673 835 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 484 742 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0673 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32