Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0691 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACTCCGAAACACCCATCAAAATCCAACCCACCACAAAATCTCACCCCATCACCAACGGCGTCCTCAAGCGCCACCACTACACGGCGCCGCCGCCTCCTCAGGTGGTTTACAAAGAATGCCTCAAAAATCACGCCGCCAGTTTAGGCGGCCACGCTCTAGACGGCTGCGGCGAGTTCATGCCATCCCCAACCGCCACTACCACCGATCCCACCTCCCTCAAATGCGCCGCTTGCGGCTGCCACCGGAATTTTCACCGACGTGAACCGGATGACCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGTCACCACCCGCCGCCTCCGCATACGGCGGTGGCCCACCGGAGTCCGAGTTCCGCATCTCCTCCTCCGATCTCCTCCTCGTACTACCCTTCCGCACCCCACATGCTTCTAGCCCTCTCCGGTGGACTGCCGGAGAACGCTGGGGGCGGCGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAGAATGTACGAATTTGCGGAGAAAGTAGGATGGAAGATTCAGAAGCGAGACGAGGATATGATTCAAGAATTCTGCAGCGACGTCGGAGTTGACAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAAAACACCCTCGGGAAAAAAGACGGCGGTCGGAATATGAACGGCAGCGGTGGCGATGGAGACGGCGACGGCGACGAGAAAATTAACGGCGGTGGCGAACCACACGCCACCGCAAATGGGTCGTCTTCATCCTCTTGA 900 56.67 MDLTPAISTAAATISTGGGAVKSPELDSETPIKIQPTTKSHPITNGVLKRHHYTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMPSPTATTTDPTSLKCAACGCHRNFHRREPDDPIATPTTTHVIEYQPHHRHHPPPPHTAVAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGGGGGFHHSILTPSPNSRKRFRTKFTQNQKERMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNMNGSGGDGDGDGDEKINGGGEPHATANGSSSSS 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8701566 8704048 + PI0004749.1 Cmetu04g0691 353135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0691 299 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 258 - -
Cmetu04g0691 299 Gene3D - 192 260 - -
Cmetu04g0691 299 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cmetu04g0691 299 MobiDBLite consensus disorder prediction 255 299 - -
Cmetu04g0691 299 MobiDBLite consensus disorder prediction 131 160 - -
Cmetu04g0691 299 MobiDBLite consensus disorder prediction 16 55 - -
Cmetu04g0691 299 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cmetu04g0691 299 FunFam Zinc-finger homeodomain protein 2 188 260 - -
Cmetu04g0691 299 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cmetu04g0691 299 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Cmetu04g0691 299 MobiDBLite consensus disorder prediction 30 44 - -
Cmetu04g0691 299 SUPERFAMILY Homeodomain-like 192 260 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0691 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0691 Cmetu-Chr4:8701566 Cmetu09g0673 Cmetu-Chr9:19790625 5.30E-68 dispersed
Cmetu10g0522 Cmetu-Chr10:19375279 Cmetu04g0691 Cmetu-Chr4:8701566 3.20E-35 wgd
Cmetu02g1465 Cmetu-Chr2:23678679 Cmetu04g0691 Cmetu-Chr4:8701566 4.30E-16 wgd
Cmetu04g0691 Cmetu-Chr4:8701566 Cmetu09g1945 Cmetu-Chr9:19775919 1.20E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu10g1264 . 76 285 ZF-HD Transcription Factor Family AT2G02540 56.5 1.2e-51 200.7
Cmetu08g0546 . 26 220 ZF-HD Transcription Factor Family AT4G24660 50.8 1.5e-46 183.3
Cmetu04g0691 . 30 262 ZF-HD Transcription Factor Family AT5G39760 63.9 1.6e-49 193.7
Cmetu09g0673 . 24 260 ZF-HD Transcription Factor Family AT5G39760 57.1 3.1e-48 189.5
Cmetu03g1591 . 46 237 ZF-HD Transcription Factor Family AT5G65410 54.4 1.9e-43 173.3
Cmetu10g0522 . 5 192 ZF-HD Transcription Factor Family AT1G69600 51.9 2.5e-47 186.0
Cmetu09g0673 . 56 257 ZF-HD Transcription Factor Family AT1G69600 51.5 3.2e-47 185.7
Cmetu04g0691 . 12 269 ZF-HD Transcription Factor Family AT5G15210 54.1 1.1e-48 190.7
Cmetu09g0673 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.4 3.0e-46 182.6
Cmetu10g1264 . 73 288 ZF-HD Transcription Factor Family AT1G14440 54.0 2.7e-54 209.5
Cmetu04g0691 . 22 264 ZF-HD Transcription Factor Family AT3G28920 60.7 1.3e-56 217.2
Cmetu09g0673 . 16 256 ZF-HD Transcription Factor Family AT3G28920 61.9 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7710 PF04770 ZF-HD_dimer 1.50E-29 No_clan Cmetu TF