Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0694 ATGGCACCGAGATTGGGGTTTTTGTGTCGGTGGGGTAAAGAGAAAGACCCTCAAAAGGGAACACCGGTGGTTGTAACAATGGAGAAACCTAACTTCTCCGTCGTGGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCCAAACAGGTCACATGGGTTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTCTTACTGTTCTTTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGACAAGGAGTCGCCATTGAAGGCGGGAAGTTAGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCTATTGCCATTCTTGCTTTTGAAATACTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTCCATATTCCTCAAGCTTCTGAGTTGCAAGGATTCCTTCATTCACTCTATGTAGCTTGGTTAACTTTTAGAGCAGACTACATTGCTCCCCTCATTCAAACACTCTCTAAATTTTGCATTGTTTTGTTCCTTATTCAATCAGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATTAAGTACAAAAGAATTGAACCCAAGATTGAAGGGGATCCCTTCAAGTTAGATGATGTGGAGGGAGCTGGGTACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGGGAGGTTTATGAGCAATCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCATTTGCTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAAGCAGAGGTTGCTAAATGGAGCCAAAAGGGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTGAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAACTGACCGTCCCCCATTTCAAGGATAACCCGGAGCTTGGGTTGGTTCAGGCCAGATGGTCTTTCGTGAACACGGACGAAAACTTGTTGACGCGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTTGGTTTCAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCTTGGAGGAATCTGGAGGATGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTCTTCAGGTTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACGTGGAAGAAGGCAAATTTGGTACTGTTATTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTCCCCGTCTTCATGTCATTACTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCCTACCTTCTTTTTGAGAACACCATGTCCGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACTAAAAAAGCAGGCAGGTCCTCCGAATCTGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGACAATGAATCAAGCGCAGATCTATAGAGGTGCTTCCGAGAGTGAGATTTCCGAGTTGGCTCACTTGAAGGAACACAAAGAAGTAGTCTCTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCTCTCGCATTTCTTTTACTGTTGGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTAACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2055 43.07 MAPRLGFLCRWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLLTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSIAILAFEILAYFKGWHYFQNSNLHIPQASELQGFLHSLYVAWLTFRADYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFKLDDVEGAGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQLLIKAEVAKWSQKGTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNTDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLVLLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQAQIYRGASESEISELAHLKEHKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30753336 30756161 - PI0001870.1 Cmetu04g0694 353138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0694 684 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 438 IPR029044 -
Cmetu04g0694 684 Pfam Glycosyl transferase family group 2 313 519 IPR001173 -
Cmetu04g0694 684 FunFam probable xyloglucan glycosyltransferase 5 223 437 - -
Cmetu04g0694 684 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 520 IPR029044 -
Cmetu04g0694 684 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 158 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0694 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1896 Cmetu-Chr3:816965 Cmetu04g0694 Cmetu-Chr4:30753336 2.10E-240 dispersed
Cmetu04g0694 Cmetu-Chr4:30753336 Cmetu09g0739 Cmetu-Chr9:19240829 4.50E-264 dispersed
Cmetu04g0694 Cmetu-Chr4:30753336 Cmetu07g2267 Cmetu-Chr7:23109624 8.80E-252 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g2039 . 221 382 REM Transcription Factor Family AT1G49480 71.0 7.1e-57 217.6
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu04g0694 . 1 684 REM Transcription Factor Family AT2G24630 75.9 2.5e-310 1061.2
Cmetu09g0739 . 6 668 REM Transcription Factor Family AT2G24630 69.0 2.4e-265 911.8
Cmetu07g2267 . 1 706 REM Transcription Factor Family AT2G24630 64.0 2.9e-263 904.8
Cmetu03g1896 . 5 704 REM Transcription Factor Family AT2G24630 65.5 7.0e-257 883.6
Cmetu01g2286 . 5 694 REM Transcription Factor Family AT2G24630 62.1 1.1e-246 849.7
Cmetu11g2039 . 221 382 REM Transcription Factor Family AT1G49480 71.0 7.1e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38