Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0801 ATGGCGAAAGAGAGAGAATTACTCGTTTACTCTGCTAAATTGGCTGAACAAGCTGAGAGATATGAAGAGATGGTTGAGGAAATGAAGAAAGTTGCGAAGTTAAATGTGGAATTGACAGTGGAAGAGAGAAATCTGCTATCTGTTGGCTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTGTCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGGTTATAGGCATGGGGTCGAAGACGAGCTCTCTAAAATATGCAGTGATATATTGTCAACCATTGACCAGCATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTATTCTACCACAAGATGAAAGGAGACTACTGTCGGTATTTGGCTGAGTTTAAATCCGGTGATGAGCGTAAACAAGTTGCGGATCAGTCATTAAAGTCTTATGAGGCTGCTTCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCTCTGAACTTCTCTGTTTTCTACTATGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCTAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAATGAGGAATCCTACAAGGACAGTACCCTTATTATGCAGCTCCTTAGGGACAATCTAACTCTGTGGACGTCCGATCTTCCAGACGAAGGTGGAGAGCAGTCCAATGCCGATGAACTTTAG 750 42.67 MAKERELLVYSAKLAEQAERYEEMVEEMKKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIGYRHGVEDELSKICSDILSTIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQVADQSLKSYEAASAIANSDLSPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSNADEL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31104046 31111301 - PI0018395.1 Cmetu04g0801 353245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0801 249 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
Cmetu04g0801 249 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Cmetu04g0801 249 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Cmetu04g0801 249 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Cmetu04g0801 249 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Cmetu04g0801 249 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Cmetu04g0801 249 PANTHER 14-3-3 PROTEIN 5 235 IPR000308 -
Cmetu04g0801 249 FunFam 14-3-3 protein epsilon 1 246 - -
Cmetu04g0801 249 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Cmetu04g0801 249 ProSitePatterns 14-3-3 proteins signature 2. 215 234 IPR023409 -
Cmetu04g0801 249 PIRSF 2014/3/3 1 246 IPR000308 -
Cmetu04g0801 249 SMART 1433_4 5 246 IPR023410 -
Cmetu04g0801 249 Pfam 14-3-3 protein 12 233 IPR023410 -
Cmetu04g0801 249 SUPERFAMILY 14-3-3 protein 4 235 IPR036815 -
Cmetu04g0801 249 Coils Coil 11 34 - -
Cmetu04g0801 249 Coils Coil 193 213 - -
Cmetu04g0801 249 Gene3D - 1 246 IPR036815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0801 K06630 - - csv:101213169 451.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0801 Cmetu-Chr4:31104046 Cmetu10g0316 Cmetu-Chr10:19664674 1.50E-103 dispersed
Cmetu03g1289 Cmetu-Chr3:2494203 Cmetu04g0801 Cmetu-Chr4:31104046 4.40E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g1402 . 4 241 14-3-3 family AT4G09000 87.0 2.6e-113 405.6
Cmetu03g2141 . 4 232 14-3-3 family AT4G09000 87.0 4.1e-111 398.3
Cmetu04g2206 . 11 246 14-3-3 family AT4G09000 75.4 8.1e-99 357.5
Cmetu01g2437 . 7 238 14-3-3 family AT4G09000 73.1 2.3e-93 339.3
Cmetu10g0316 . 4 239 14-3-3 family AT4G09000 72.7 5.6e-92 334.7
Cmetu03g0585 . 4 239 14-3-3 family AT4G09000 71.8 8.1e-91 330.9
Cmetu04g2791 . 1 202 14-3-3 family AT4G09000 75.3 1.5e-89 326.6
Cmetu03g1289 . 5 236 14-3-3 family AT4G09000 69.7 9.9e-89 323.9
Cmetu04g0801 . 5 236 14-3-3 family AT4G09000 73.1 1.3e-88 323.6
Cmetu03g2297 . 10 238 14-3-3 family AT4G09000 64.2 7.9e-78 287.7
Cmetu03g2141 . 6 251 14-3-3 family AT1G78300 86.7 3.1e-117 418.3
Cmetu07g1402 . 6 253 14-3-3 family AT1G78300 86.7 1.2e-116 416.4
Cmetu04g2206 . 11 247 14-3-3 family AT1G78300 75.9 1.3e-99 359.8
Cmetu01g2437 . 7 247 14-3-3 family AT1G78300 71.2 6.4e-94 340.9
Cmetu03g0585 . 8 257 14-3-3 family AT1G78300 70.6 5.4e-93 337.8
Cmetu10g0316 . 8 260 14-3-3 family AT1G78300 70.6 9.2e-93 337.0
Cmetu03g1289 . 1 250 14-3-3 family AT1G78300 67.5 3.9e-91 331.6
Cmetu04g0801 . 1 243 14-3-3 family AT1G78300 69.4 4.7e-89 324.7
Cmetu04g2791 . 1 196 14-3-3 family AT1G78300 77.3 1.4e-88 323.2
Cmetu03g2297 . 11 238 14-3-3 family AT1G78300 64.9 1.3e-78 290.0
Cmetu07g1402 . 6 259 14-3-3 family AT5G38480 89.8 4.9e-123 437.6
Cmetu03g2141 . 6 242 14-3-3 family AT5G38480 83.0 1.7e-107 386.0
Cmetu04g2206 . 10 251 14-3-3 family AT5G38480 73.1 2.7e-97 352.1
Cmetu10g0316 . 8 255 14-3-3 family AT5G38480 73.6 2.8e-94 342.0
Cmetu01g2437 . 7 247 14-3-3 family AT5G38480 72.0 6.9e-93 337.4
Cmetu03g0585 . 8 255 14-3-3 family AT5G38480 72.0 9.0e-93 337.0
Cmetu03g1289 . 5 247 14-3-3 family AT5G38480 71.4 7.6e-92 334.0
Cmetu04g0801 . 5 248 14-3-3 family AT5G38480 71.1 1.8e-88 322.8
Cmetu04g2791 . 1 206 14-3-3 family AT5G38480 71.5 1.4e-85 313.2
Cmetu03g2297 . 10 238 14-3-3 family AT5G38480 65.5 1.8e-77 286.2
Cmetu07g1402 . 3 240 14-3-3 family AT1G35160 86.2 7.7e-112 400.6
Cmetu03g2141 . 3 232 14-3-3 family AT1G35160 86.7 2.9e-111 398.7
Cmetu04g2206 . 11 246 14-3-3 family AT1G35160 76.7 8.9e-100 360.5
Cmetu01g2437 . 2 237 14-3-3 family AT1G35160 71.0 4.0e-92 335.1
Cmetu10g0316 . 8 239 14-3-3 family AT1G35160 73.5 1.5e-91 333.2
Cmetu03g0585 . 8 239 14-3-3 family AT1G35160 72.6 1.3e-90 330.1
Cmetu03g1289 . 5 236 14-3-3 family AT1G35160 69.7 5.4e-89 324.7
Cmetu04g0801 . 5 236 14-3-3 family AT1G35160 73.1 1.6e-88 323.2
Cmetu04g2791 . 1 196 14-3-3 family AT1G35160 76.4 6.0e-88 321.2
Cmetu03g2297 . 1 238 14-3-3 family AT1G35160 63.4 4.3e-78 288.5
Cmetu07g1402 . 4 254 14-3-3 family AT5G16050 86.1 2.5e-117 418.7
Cmetu03g2141 . 3 243 14-3-3 family AT5G16050 76.5 1.9e-101 365.9
Cmetu04g2206 . 10 248 14-3-3 family AT5G16050 70.3 1.1e-91 333.6
Cmetu10g0316 . 3 246 14-3-3 family AT5G16050 65.9 1.9e-85 312.8
Cmetu03g0585 . 3 246 14-3-3 family AT5G16050 66.3 2.5e-85 312.4
Cmetu01g2437 . 1 246 14-3-3 family AT5G16050 65.1 1.6e-84 309.7
Cmetu03g1289 . 2 247 14-3-3 family AT5G16050 64.9 2.8e-84 308.9
Cmetu04g0801 . 5 242 14-3-3 family AT5G16050 66.7 4.9e-81 298.1
Cmetu04g2791 . 1 208 14-3-3 family AT5G16050 67.6 5.6e-77 284.6
Cmetu03g2297 . 10 238 14-3-3 family AT5G16050 61.6 3.2e-72 268.9
Cmetu04g2206 . 9 246 14-3-3 family AT5G10450 84.9 1.8e-110 396.0
Cmetu07g1402 . 4 259 14-3-3 family AT5G10450 73.5 3.6e-103 371.7
Cmetu03g2141 . 3 241 14-3-3 family AT5G10450 74.4 1.7e-97 352.8
Cmetu03g2297 . 9 238 14-3-3 family AT5G10450 77.0 4.4e-93 338.2
Cmetu01g2437 . 1 238 14-3-3 family AT5G10450 68.0 1.9e-88 322.8
Cmetu03g1289 . 5 236 14-3-3 family AT5G10450 67.2 3.3e-85 312.0
Cmetu10g0316 . 3 239 14-3-3 family AT5G10450 66.3 4.8e-84 308.1
Cmetu03g0585 . 3 239 14-3-3 family AT5G10450 65.4 2.4e-83 305.8
Cmetu04g0801 . 5 236 14-3-3 family AT5G10450 67.7 3.1e-83 305.4
Cmetu04g2791 . 1 196 14-3-3 family AT5G10450 67.8 2.6e-77 285.8
Cmetu07g1402 . 6 260 14-3-3 family AT3G02520 92.6 4.0e-128 454.5
Cmetu03g2141 . 6 242 14-3-3 family AT3G02520 84.3 1.7e-110 396.0
Cmetu04g2206 . 10 248 14-3-3 family AT3G02520 74.9 3.9e-99 358.2
Cmetu10g0316 . 8 256 14-3-3 family AT3G02520 69.6 8.5e-94 340.5
Cmetu03g0585 . 8 257 14-3-3 family AT3G02520 69.4 3.2e-93 338.6
Cmetu03g1289 . 1 249 14-3-3 family AT3G02520 69.4 2.1e-92 335.9
Cmetu01g2437 . 1 238 14-3-3 family AT3G02520 71.3 4.0e-91 331.6
Cmetu04g0801 . 1 241 14-3-3 family AT3G02520 71.6 9.8e-90 327.0
Cmetu04g2791 . 1 195 14-3-3 family AT3G02520 76.8 4.5e-87 318.2
Cmetu03g2297 . 10 238 14-3-3 family AT3G02520 66.8 4.1e-80 295.0
Cmetu04g2206 . 9 246 14-3-3 family AT5G65430 84.5 2.0e-111 399.1
Cmetu07g1402 . 7 241 14-3-3 family AT5G65430 79.2 1.5e-103 372.9
Cmetu03g2141 . 8 232 14-3-3 family AT5G65430 78.0 1.1e-96 350.1
Cmetu03g2297 . 9 255 14-3-3 family AT5G65430 73.4 1.5e-95 346.3
Cmetu01g2437 . 1 238 14-3-3 family AT5G65430 69.7 7.3e-90 327.4
Cmetu03g1289 . 5 236 14-3-3 family AT5G65430 68.9 2.2e-86 315.8
Cmetu10g0316 . 8 239 14-3-3 family AT5G65430 69.8 2.9e-86 315.5
Cmetu03g0585 . 8 239 14-3-3 family AT5G65430 68.5 9.3e-85 310.5
Cmetu04g0801 . 5 236 14-3-3 family AT5G65430 69.4 1.6e-84 309.7
Cmetu04g2791 . 1 197 14-3-3 family AT5G65430 68.4 4.9e-78 288.1
Cmetu01g2437 . 1 261 14-3-3 family AT2G42590 81.7 4.0e-118 421.4
Cmetu10g0316 . 6 257 14-3-3 family AT2G42590 76.3 8.6e-105 377.1
Cmetu03g1289 . 3 242 14-3-3 family AT2G42590 77.5 2.8e-103 372.1
Cmetu03g0585 . 6 253 14-3-3 family AT2G42590 75.4 1.0e-102 370.2
Cmetu04g0801 . 3 245 14-3-3 family AT2G42590 76.1 8.9e-102 367.1
Cmetu07g1402 . 8 248 14-3-3 family AT2G42590 72.6 3.2e-91 332.0
Cmetu03g2141 . 8 238 14-3-3 family AT2G42590 68.9 3.1e-86 315.5
Cmetu04g2206 . 11 248 14-3-3 family AT2G42590 65.5 9.2e-83 303.9
Cmetu04g2791 . 1 195 14-3-3 family AT2G42590 62.3 2.4e-67 252.7
Cmetu03g2297 . 11 238 14-3-3 family AT2G42590 55.7 4.0e-62 235.3
Cmetu03g1289 . 1 241 14-3-3 family AT1G22300 79.7 8.6e-104 373.6
Cmetu10g0316 . 5 244 14-3-3 family AT1G22300 78.3 1.5e-103 372.9
Cmetu01g2437 . 6 242 14-3-3 family AT1G22300 78.1 4.3e-103 371.3
Cmetu03g0585 . 5 244 14-3-3 family AT1G22300 76.7 1.8e-101 365.9
Cmetu04g0801 . 1 241 14-3-3 family AT1G22300 77.6 9.8e-100 360.1
Cmetu07g1402 . 5 246 14-3-3 family AT1G22300 70.7 2.2e-91 332.4
Cmetu03g2141 . 8 236 14-3-3 family AT1G22300 69.0 5.8e-84 307.8
Cmetu04g2206 . 11 248 14-3-3 family AT1G22300 65.5 1.0e-80 297.0
Cmetu04g2791 . 1 195 14-3-3 family AT1G22300 61.0 9.3e-66 247.3
Cmetu03g2297 . 11 238 14-3-3 family AT1G22300 56.1 2.6e-60 229.2
Cmetu03g1289 . 1 245 14-3-3 family AT1G34760 80.8 2.7e-105 378.6
Cmetu01g2437 . 6 246 14-3-3 family AT1G34760 80.5 3.5e-105 378.3
Cmetu10g0316 . 5 245 14-3-3 family AT1G34760 81.3 6.0e-105 377.5
Cmetu03g0585 . 5 247 14-3-3 family AT1G34760 79.4 6.6e-104 374.0
Cmetu04g0801 . 1 244 14-3-3 family AT1G34760 78.7 1.3e-99 359.8
Cmetu07g1402 . 5 250 14-3-3 family AT1G34760 71.5 3.2e-90 328.6
Cmetu03g2141 . 8 235 14-3-3 family AT1G34760 70.2 2.9e-83 305.4
Cmetu04g2206 . 11 247 14-3-3 family AT1G34760 63.7 1.5e-79 293.1
Cmetu04g2791 . 1 196 14-3-3 family AT1G34760 61.6 1.6e-65 246.5
Cmetu03g2297 . 11 238 14-3-3 family AT1G34760 55.3 2.2e-59 226.1
Cmetu10g0316 . 2 254 14-3-3 family AT1G26480 87.0 7.7e-119 423.7
Cmetu03g0585 . 2 254 14-3-3 family AT1G26480 85.8 8.6e-118 420.2
Cmetu01g2437 . 3 242 14-3-3 family AT1G26480 80.4 1.0e-107 386.7
Cmetu03g1289 . 2 249 14-3-3 family AT1G26480 76.2 9.2e-104 373.6
Cmetu04g0801 . 3 242 14-3-3 family AT1G26480 78.3 4.3e-101 364.8
Cmetu07g1402 . 2 256 14-3-3 family AT1G26480 72.0 2.8e-92 335.5
Cmetu03g2141 . 8 250 14-3-3 family AT1G26480 70.1 9.2e-88 320.5
Cmetu04g2206 . 11 244 14-3-3 family AT1G26480 67.5 3.4e-82 302.0
Cmetu04g2791 . 1 195 14-3-3 family AT1G26480 64.9 2.8e-68 255.8
Cmetu03g2297 . 11 238 14-3-3 family AT1G26480 55.7 1.1e-61 233.8
Cmetu10g0316 . 5 237 14-3-3 family AT1G78220 53.4 7.0e-66 247.7
Cmetu03g1289 . 1 234 14-3-3 family AT1G78220 51.5 1.1e-63 240.4
Cmetu01g2437 . 6 236 14-3-3 family AT1G78220 50.9 2.5e-63 239.2
Cmetu03g0585 . 5 237 14-3-3 family AT1G78220 50.9 2.1e-62 236.1
Cmetu04g0801 . 1 234 14-3-3 family AT1G78220 50.2 8.8e-61 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148