Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0898 ATGCAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGAATCTGCAAATGCTGCCATAGAGTCACTGAATGGCTTTACCGTTGGGGATAAGCAGATATATGTTGGAAAGTTTGTCAGGAAGAGTGATCGAGTTTTGGCCAATCCTGATATTAAATATACCAATTTGTATGTGAAAAATCTTGACCCAGAGATTGAGGAAGAGCATTTGCAGGAGAAATTCTCTGAGTTTGGAAAAATTTCCAGCATGATTATTTCAAGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATCAACTTTGAAAACTCTGATGATGCCAAACGGGCATTGGAAACACTTAATGGATCGCAACTTGGTTCTAAGGTTATCTACATTGCGAGGGCACAAAAGAAGACCGAACGTGAGGAAGTATTACGTCGACATTATGAAGAGAAATGTAAGGAGCAAGTGTTAAAATACAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTTACCGATGACGAACTAAGAGAGCGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTTTCCAATCCTGATGAAGCTAAAAGAGCTGTGAACACTTTGCAAGGATGCATGTTTCACGGGAAGCCACTCTATTTGGCAATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCGCAACGGCTAGCAGGGATACCAGGACCGTCGACTGCAATTTTTCCTGGTGGATACCCACCTTATTACTACCCAGCACCTGGTGTTGTTCCACCAGTAGCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGTATGAGGCCTGGGTGGAGAGCTAATACTTATACATCTCCTGCAAGACCTGGCTTTCAACCTTCACCACTACCTACTATACCGACTGCTTCGAGGCAACCCAGACAAAACAGAGGCAAAATGAACGGACCAATGCTTTCTCATCAGAATGGAGTCCAATCTGTCTCTTATATGCAAAATTCACAAGATGCCAATCAATCAGTAGTTACTGTAAAATCATCCGGCAATCAGCAGTGGACCGGACAGGTTAAGTATGTCCCAAATGCTCGCTCATGCGAAACGAACAAAGCTTCTGGATCCTCAGTTGTTGCTGCTTTTAATTCTGTTGGAGATGTCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTTCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTTTACCCCCTAGTCCAAAAACGCAAGCCGGAGCTTGCTGCAAAAATTACGGGTATGCTTCTGGAGATGGACAACTCGGAATTGCTACTCCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGACTAAGCTCTCCAACCAAGACACACTCAGTTTCTTACCAGCTGAGCTTGCAGTTAACTGA 1605 43.36 MQNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDRVLANPDIKYTNLYVKNLDPEIEEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDDELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTAIFPGGYPPYYYPAPGVVPPVASRPGLMFQPLGMRPGWRANTYTSPARPGFQPSPLPTIPTASRQPRQNRGKMNGPMLSHQNGVQSVSYMQNSQDANQSVVTVKSSGNQQWTGQVKYVPNARSCETNKASGSSVVAAFNSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPELAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKLSNQDTLSFLPAELAVN 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4668024 4672576 + PI0017395.1 Cmetu04g0898 353342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0898 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Cmetu04g0898 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Cmetu04g0898 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 67 IPR000504 GO:0003723
Cmetu04g0898 534 SMART poly_2 451 514 IPR002004 GO:0003723
Cmetu04g0898 534 FunFam Polyadenylate-binding protein 174 282 - -
Cmetu04g0898 534 SUPERFAMILY RNA-binding domain, RBD 189 281 IPR035979 GO:0003676
Cmetu04g0898 534 CDD RRM4_I_PABPs 190 268 - -
Cmetu04g0898 534 SUPERFAMILY RNA-binding domain, RBD 3 169 IPR035979 GO:0003676
Cmetu04g0898 534 Pfam Poly-adenylate binding protein, unique domain 446 511 IPR002004 GO:0003723
Cmetu04g0898 534 FunFam Polyadenylate-binding protein 79 173 - -
Cmetu04g0898 534 MobiDBLite consensus disorder prediction 339 364 - -
Cmetu04g0898 534 FunFam Polyadenylate-binding protein 437 523 - -
Cmetu04g0898 534 Coils Coil 160 180 - -
Cmetu04g0898 534 Gene3D - 177 277 IPR012677 -
Cmetu04g0898 534 Gene3D - 80 176 IPR012677 -
Cmetu04g0898 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Cmetu04g0898 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Cmetu04g0898 534 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 439 516 IPR002004 GO:0003723
Cmetu04g0898 534 SMART rrm1_1 1 70 IPR000504 GO:0003723
Cmetu04g0898 534 SMART rrm1_1 192 264 IPR000504 GO:0003723
Cmetu04g0898 534 SMART rrm1_1 89 161 IPR000504 GO:0003723
Cmetu04g0898 534 Gene3D - 436 516 - -
Cmetu04g0898 534 PANTHER RNA BINDING PROTEIN 2 303 - -
Cmetu04g0898 534 SUPERFAMILY PABC (PABP) domain 436 522 IPR036053 GO:0003723
Cmetu04g0898 534 Gene3D - 1 79 IPR012677 -
Cmetu04g0898 534 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 2 512 IPR006515 GO:0003723
Cmetu04g0898 534 SMART rrm2_1 192 264 IPR003954 GO:0003676
Cmetu04g0898 534 SMART rrm2_1 5 70 IPR003954 GO:0003676
Cmetu04g0898 534 SMART rrm2_1 89 161 IPR003954 GO:0003676
Cmetu04g0898 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 74 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0898 K13126 - - csv:101203793 964.526
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0898 Cmetu-Chr4:4668024 Cmetu06g1424 Cmetu-Chr6:10403163 1.30E-80 dispersed
Cmetu04g0898 Cmetu-Chr4:4668024 Cmetu01g2628 Cmetu-Chr1:565687 8.80E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1085 . . . . Bpe04g01557 Bpe03g01262 Bma04g01610 Bma10g00064 . Cmo14g00244 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag1215 . . . Cme04g02457 Blo07g01371 Blo09g00527 Bda03g01696 Bda05g01200 . . . . Sed04g1427 . . . Cma14g00253 . Car14g00231 . . Bhi11g02015 Tan08g1806 Cmetu04g0898 . . . . . . . . . . . Lsi03g01958 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007392 2 1 2 2 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 36