Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0903 ATGTTTTCAATCTCTGCAATTAATGATACCGACTCCACAAATCAGTGGGAACCCTTAGCTCCCACTAAAGAAGCTCAGGAATTCCATTTGACGAAAACTTACCATGATGGACTTCTTAAATTACAAGCAAAAGAATATGAAAAGGCTCGTGAGTTGTTAGAATCTGTTCTCAAAGATCATTTGATAGAATCTGCACAGGTTGATGGTGAAGCTGGTGATAATCATCTACTGCAGCTCAGATTCTTAGCACTTAAGAATCTAGCAACTGTATGTCTACAACAGGGATCTGCTCATTATGAGGGTGCTCTGCGTTGTTATCTTCAAGCCGTTGAAATTGATTCTAAAGATTCCGTTGTTTGGAACCAGCTGGGTACTTTATCTTGCTCAATGGGCTTACTTAATATTTCACGTTGGGCATTTGAGCAAGGACTTGTGTGCAGCCCAAATAATTGGAACTGCATGGAGAAGCTGTTGGAAGTTCTAATTGCAATACGTGATGAGGTTGCCTGTCTTTCTGTAGCAGAATTGATTTTGAGGCACTGGCCATCACATACTCGTGCTTTGCATGTGAAACTTACTATTGAAGAGTCAGAATCTGTTCCATATGCACCCAAAGGTATTGATAAGCTAGAATCAAAACATGTCCGACTCAAATTTATTGATAAGAGGAAGGCTGGTGAAGAGGATCTTGATGAAGACGTGAAAGTTAAAAGGTCAAACCAGAATATAGATCTCCACCTTGCAGAAGTTTCCTGGGTTGGTCTTGTTGATGCACTCCTAGATATCTTACTGCCATTGAGCGGATGTGGGTCTGAGGTGGAGGCTGAAAAATCGCTTAGATCTGGTGATGTTAGATTAAGAATATGCTCAACTCCCAATTCAGATCGTAGCAGTGCATTTATGGAGAGGAAAGAGCTTGCTTCTACCTCCACTTGTGATAATACATCACTTGCAGATTCTAACACAGAAAGTTCATCTTCTTTTAAGGAAAAAGAGGCAAGTGGTTTAGATGAACATCCACAAGAGCGGCGTAGTACTCGTCTTGAAAGGCTAAGAAGTCGTAAGCCTGGAAAAGAAGAATTAGATTATTCAACAAGTAAAGACCTGGCAAGGGTTGTAACTCAGTATCTAGAACCCTTTATTTCCAGTGGATTGGGAACCAAAGATAGCGACCGTGAGACCAGGAATTCTGTTTCCTACGGTGATGGGGAGAATTCACAGGGTTTAGACTGCAATGATGTTCATACTTTTTTGGTAGAAACTTCCTGTAATTATGGTGCTTACCATGTGAGTCATATGCTTTTAGAAAAGCTTTCAAGCACATATCCTCCACATCAGGATGCATTTTTCAAATTTCTGGACTTAGAAAAGTTGACAAGGCATTGGGGAAAGGACAGATCTCCCGAATGCAATCTTTTTCTTGCTGAACTCTATTTCGACTTTGGATCATCCTCTTCTGATACTACCAAGCAATCTGAATTCATGTCAGAGGCTTCATATCATCTCTGTAAGATCATTGAATTAGTAGCCCTGGAACAGAGTGATAATTGCTCTAGCAGTCCTCAAGGTTCCAGCCGAATATCATCTGAAAATTCTAGTAATCAGCACTTATTTGTAGAAAATTCACTATTAACCAATAACAGATCATTCTGGGTACGATTCTTTTGGCTTAGCGGGCAATTGTCTTTGCGGGATGGAAACAAGGCAAAAGCCTGTGAAGAGTTCTGTATTTCTTTATCGCTTCTGGAAAAGATGAAAGATGTGAATGGTTCTCTGTTACTGATCTGCCTCCCTCACTGTCGGGTTTTGAAAATGCTAACCTTGGATAGAATACTTTATGAAATTAATGTTCTAAAGGTTGACCTCTTGATGAAGAATGCTGTACCTGAAATGTTTGAGAAAGAAATGTATGAGGAGTGCATCACTTTACTTTCTCCGCTTCTATTTAGTGTACAGGAAGTTGACCTTGATGCCTTATCCTTACATTTTTTAGGAAGAAAAGATGCAGGGATTACTTCAGTGGAACTTGCAGCAATTGATGTTTTAATCAAATCGTGTGAGAAGGAAAATCATTTGGATATCGAGATACTTTTGAATTCTCACCAACGGAAGCTGCAAATACTCATGGCAGCTGCTGGAATGCATGAATACTTTACATCAAATAAATCATTTCGTGAGAAGTCAGAGGCAAAAGCACTCTCTGACATTGAAGCGAAGGATAGTCCTAGCAGTCACTTGAACCATCTAGTCGCAGAAGAAGTAAAAGCAATATCTCAATGTATATCCCAAGTAAAGAACTCCATCGAACATTCTGAAGACTCGAATGACATTCAGACAAGGAGAATTTGTGATATGCAGTTCTTGCTTTTATCAGTCATGTGTAATGTTATAAACCTCTTTCTCTCCAAGAAGTCTTCTGGGGCGGCAGTTGATGATCAAGTTGAAAGATGCTGCCTCGTAGATGCAGCCATTGCATTCTGCAAACTCCAACATCTTGATCTTTCTGTGCCTGTGAAATCTCACGTTGAGTTAATTGGTGCAACACACGACCTACTTGCAGAATATGGTCTCTGCTGTTGGGGCGAGGGTGAAGGAGAGGAAGGAAAATTCCTTAAATTTTCCATAAAGCATCTCTTAGCCTTGGATATGAAACTTAAATTGAACAGTTCGGTAAATGAGAACAGAAGTGAATGCGATGACATGGAATGGGAGAATTGTCAGGTAAAGGCATCTCCAGACCGTTCAAAATTGAATGCTCAAGATTTGGGGTTGAGTCAAAAGGATGATGCCAGATCCATGATGGAGGATGCTGGGGAGGATATAACACGGGAAGGCTTGTCAACTCATAAATCAATATTGAAAGATGCTACAGAAGGAGAATTTATTAAACAAAGAGATGAGGAGTCCGTTGGCAAGTTCAATGCCGGTGACAATAATAGTGACCAACTAGTAGAATGTGAGAATGAGCAAAATGAAGATGAAAAGGAGGAACTAGAATTAAAAATTGAAAATACGTTGGATCAGTGCTTTTTCTGCTTGTATGGGTTAAACCTCAGATGTGACTCATCTTATGATGATGATCTATCTGTACATAAAAATACTAGCCGTGGGGATTATCAGACCAAAGAACAGTGTGCTGATGTTTTCCAGTATATACTCCCTTATGCAAAGGCTTCATCTAGAACTGGATTAGTCAAGCTGCGAAGAGTTCTAAGAGCCATCCGCAAACACTTTTTAAAACCACCAGAGGATGTATTGGATGGAAATGTGGTAGACAAGTTCCTAGATGATCCCAATTTATGTGAAGAAAAACTCTCTGACGAAGCTGGTTCAGATGAGTTTCTTGTAACAATGACAAAGATATTACTTAATGATGTAGGAAGCATTAAACAGTATCGAACATCAGTCGTAGGAAGTTCTGAACCATATTTGGAAGTTTATAGCAGCTTGTATTATTTCCTTGCTCAATCAGAGGAAATGAGTGCAACTGACAAATGGCCAGGTTTTGTGCTCACCAAGGAAGGGGAGGAATTTGTACAACATAATGCAAACCTCTTCAAATATGATCTACTGTATAATCCTTTGCGATTTGAGAGCTGGCAAAAACTTGCTCATATTTATGATGAGGAGGTAGACCTGTTGCTCAATGATGGCAGTAAGCACATCAACGTTGCAGGATGGAGGAAAAATGATTCTTTACCCCATAGAGTGGAGATAAGCCGGAGGAGGAGCCGGCGTTGTCTACTAATGAGTTTAGCTTTAGCAAAGTCACCAACTCAGCAGCGTGAGATACATGAGCTATTAGCTCTGGTGTACTACGACAGCCTTCAAAATGTGGTTCCTTTCTATGATCAGCGGTCTGTGGTGCCACCAAAGGATGAAGCATGGGTCAGATTTTGTGAGAACTCGTTGAAACATTTCAAGAAAGCTTTTGCACATCAGCAAGACTGGTCTCATGCATTCTATATGGGCAAACTTAGTGAAAAGCTCGGACTCTCACATGATGAAGCTCTATCATATTATGCTAAAGCTATTGCCTTAAATCCATCAGCTGTTGATTCTATTTACAGAATGCATGCATCACGCTTAAAGTTTCTTGGTAAATGTGCAAAAGAAGATCTGCAGGCTTGGAAGGATCTTTCAACTTATGCCTTCAGCCAGTCAACTAGAGATGCTGTGATGGAAATATCAAGTAAGTTTGGTCCCAAGACTTCGGATTTATCTACACACATGGATGGCCATGAAGCATATTCTGAGGATATAAAGCATGATGAATTCCTCGAAGTGGAAAAGGCGTGGCACATGCTGTATAATGATTGTCTTTCTGGTCTTGAAACTTGTGTTGAAGGGGATCTTAAACATTATCATAAAGCCAGATATACACTTGCTCGGGGTCTTTATAGAAGGGGCGAGAACGGTGATGTGGATAAAGCAAAGGATGAGCTCTCATTTTGTTTTAAATCATCTCGTTCGTCCTTTACAATAAATATGTGGGAGATTGATAGCATGGTAAAAAAGGGAAGGCGCAAAACACCTGGTCTTTCGGGGAATAAGAAGGCACTTGAAGTTAATTTGCCAGAAAGTTCTCGGAAGTTTATTACATGTATTAGGAAGTACTTGTTGTTTTATTTGCAACTTCTGGAAGAGACTGGCGATATCTGCACCCTTGAGCGTGCTTATATATCCCTTCGAGCAGATAAAAGGTTCGCATTGTGTATTGAAGATCTTGTTCCAGTTGCTCTAGGGAGGTATGTCAAGGTTTTGATTACATCCATTCGTCAAGTCGGGATTCCTAGCACTGGTGATGCAAGCAGTTACGAACATATCCTAGAGAAAATGTTTGCTCTGTTCATGGAGCAGGGTAACTTATGGCCAGAATTGTGCAGTTTGCCTGAAATACAAGGCCCGGGTATATCAGAAAGCAATTTGTTTGGGTATCTTCACGATTATATCATTACTTTGGAGAGAAATGTCAAAGTTGAGAATCTTGAAGCAATAAATGATAGGATTCGAAAACGTTTTAAGAATCCAAAGTTGTCCAATATTAACATCGCAAAAGTTTGCAGGCATGCTTCTACTGCATGGTGTAGATCCCTTATAATCAGCTTGGCACAGATCACTCCCGTACCTTCTGAATCCTCTACCGAAAGTCAAACGTCAAGTTCATTACCTGGTGGTTTAGAAAGTAACCAGCTTCTTTGTGTGGATTTGCAAATTAATGAATTATGGAGTTCAACATTTGAGGACTCAACCCATCTGAAAAGTCTTGAACCAAAATGGTGCCCGATCTTGTCCAAAATCAATAACATATTCGTTAAAAGAGCTGCAGAAGTGAATTGGGAAACTGCTAACTCTTTGCTTCGATCTTCTTACAATTTTTTTCGTGAGAGCTCTTGTATCCTTCCATCTGGCTTGAACCTGCATCTAGTTCCATATCGTCTAGCAACAGGAGTAAACTTCCAACAGCGCATGGATGGGATTGAAATTTTAGATTTCAGCATGCCAAGGAAGCTTCTCTTGTGGGCATACACTCTAGTGCATGGTCATTTTGCTAACATTTCATCAGTGGTGAAGCATTGTGAAGAACATCTGAAGTCAAAGTTAAAAAAGGGAGTTGTAATTCCCCCCACACAAACTCATACAAACTTGCCTGCAGTGATATCTTCACCAACAGTTCTAGGCAATGGAAGAGATGGTTGTTCAAACCACAGTGGGGAAACAGATGCAGAAGCATCTCCAGTCACCCCTATTACATCTACTTCGTTGCCAGAGAATCAGACCACGACCAGTTCAATTCCGATTCTTTCGGCTGCCGACACTCGCAGAAGTTCATTTCATGGCCTTCAATTTCAACAATGTAGCAATGTCATTGCTGAGAGAATACCTAATGGAGGAGATTCAGACAAAGTATGA 5913 40.33 MFSISAINDTDSTNQWEPLAPTKEAQEFHLTKTYHDGLLKLQAKEYEKARELLESVLKDHLIESAQVDGEAGDNHLLQLRFLALKNLATVCLQQGSAHYEGALRCYLQAVEIDSKDSVVWNQLGTLSCSMGLLNISRWAFEQGLVCSPNNWNCMEKLLEVLIAIRDEVACLSVAELILRHWPSHTRALHVKLTIEESESVPYAPKGIDKLESKHVRLKFIDKRKAGEEDLDEDVKVKRSNQNIDLHLAEVSWVGLVDALLDILLPLSGCGSEVEAEKSLRSGDVRLRICSTPNSDRSSAFMERKELASTSTCDNTSLADSNTESSSSFKEKEASGLDEHPQERRSTRLERLRSRKPGKEELDYSTSKDLARVVTQYLEPFISSGLGTKDSDRETRNSVSYGDGENSQGLDCNDVHTFLVETSCNYGAYHVSHMLLEKLSSTYPPHQDAFFKFLDLEKLTRHWGKDRSPECNLFLAELYFDFGSSSSDTTKQSEFMSEASYHLCKIIELVALEQSDNCSSSPQGSSRISSENSSNQHLFVENSLLTNNRSFWVRFFWLSGQLSLRDGNKAKACEEFCISLSLLEKMKDVNGSLLLICLPHCRVLKMLTLDRILYEINVLKVDLLMKNAVPEMFEKEMYEECITLLSPLLFSVQEVDLDALSLHFLGRKDAGITSVELAAIDVLIKSCEKENHLDIEILLNSHQRKLQILMAAAGMHEYFTSNKSFREKSEAKALSDIEAKDSPSSHLNHLVAEEVKAISQCISQVKNSIEHSEDSNDIQTRRICDMQFLLLSVMCNVINLFLSKKSSGAAVDDQVERCCLVDAAIAFCKLQHLDLSVPVKSHVELIGATHDLLAEYGLCCWGEGEGEEGKFLKFSIKHLLALDMKLKLNSSVNENRSECDDMEWENCQVKASPDRSKLNAQDLGLSQKDDARSMMEDAGEDITREGLSTHKSILKDATEGEFIKQRDEESVGKFNAGDNNSDQLVECENEQNEDEKEELELKIENTLDQCFFCLYGLNLRCDSSYDDDLSVHKNTSRGDYQTKEQCADVFQYILPYAKASSRTGLVKLRRVLRAIRKHFLKPPEDVLDGNVVDKFLDDPNLCEEKLSDEAGSDEFLVTMTKILLNDVGSIKQYRTSVVGSSEPYLEVYSSLYYFLAQSEEMSATDKWPGFVLTKEGEEFVQHNANLFKYDLLYNPLRFESWQKLAHIYDEEVDLLLNDGSKHINVAGWRKNDSLPHRVEISRRRSRRCLLMSLALAKSPTQQREIHELLALVYYDSLQNVVPFYDQRSVVPPKDEAWVRFCENSLKHFKKAFAHQQDWSHAFYMGKLSEKLGLSHDEALSYYAKAIALNPSAVDSIYRMHASRLKFLGKCAKEDLQAWKDLSTYAFSQSTRDAVMEISSKFGPKTSDLSTHMDGHEAYSEDIKHDEFLEVEKAWHMLYNDCLSGLETCVEGDLKHYHKARYTLARGLYRRGENGDVDKAKDELSFCFKSSRSSFTINMWEIDSMVKKGRRKTPGLSGNKKALEVNLPESSRKFITCIRKYLLFYLQLLEETGDICTLERAYISLRADKRFALCIEDLVPVALGRYVKVLITSIRQVGIPSTGDASSYEHILEKMFALFMEQGNLWPELCSLPEIQGPGISESNLFGYLHDYIITLERNVKVENLEAINDRIRKRFKNPKLSNINIAKVCRHASTAWCRSLIISLAQITPVPSESSTESQTSSSLPGGLESNQLLCVDLQINELWSSTFEDSTHLKSLEPKWCPILSKINNIFVKRAAEVNWETANSLLRSSYNFFRESSCILPSGLNLHLVPYRLATGVNFQQRMDGIEILDFSMPRKLLLWAYTLVHGHFANISSVVKHCEEHLKSKLKKGVVIPPTQTHTNLPAVISSPTVLGNGRDGCSNHSGETDAEASPVTPITSTSLPENQTTTSSIPILSAADTRRSSFHGLQFQQCSNVIAERIPNGGDSDKV 1970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31957235 31968776 - PI0001445.1 Cmetu04g0903 353347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0903 1970 Coils Coil 981 1008 - -
Cmetu04g0903 1970 Coils Coil 39 63 - -
Cmetu04g0903 1970 Gene3D Tetratricopeptide repeat domain 1252 1506 IPR011990 GO:0005515
Cmetu04g0903 1970 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 13 198 - -
Cmetu04g0903 1970 SUPERFAMILY TPR-like 98 1358 IPR011990 GO:0005515
Cmetu04g0903 1970 MobiDBLite consensus disorder prediction 1894 1929 - -
Cmetu04g0903 1970 MobiDBLite consensus disorder prediction 384 405 - -
Cmetu04g0903 1970 SMART tpr_5 1317 1351 IPR019734 GO:0005515
Cmetu04g0903 1970 SMART tpr_5 117 150 IPR019734 GO:0005515
Cmetu04g0903 1970 SMART tpr_5 81 116 IPR019734 GO:0005515
Cmetu04g0903 1970 MobiDBLite consensus disorder prediction 310 364 - -
Cmetu04g0903 1970 MobiDBLite consensus disorder prediction 912 931 - -
Cmetu04g0903 1970 MobiDBLite consensus disorder prediction 330 364 - -
Cmetu04g0903 1970 MobiDBLite consensus disorder prediction 310 329 - -
Cmetu04g0903 1970 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 1 1958 IPR033053 GO:0006325
Cmetu04g0903 1970 Gene3D Tetratricopeptide repeat domain 28 199 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0903 K17613 - - csv:101222622 3694.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g39 . . . . . . . . . . Cma01g01445 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02317 Csa03g04535 Chy04g00168 . . . . . . . . . Sed05g1516 Cmo01g01499 . . . . . . Cpe02g00503 Bhi09g02556 Tan01g3903 Cmetu04g0903 . Hepe01g2205 Mch11g0755 . . . . . . . . . . . Cme04g00193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009721 1 3 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 32