Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0908 ATGATTGCTCGAACTCTATTCACTGCTTTCAAGACATCCATTCTTCCATCCTCTTCCTCCCAATTGCTCCCCCTCTTCTCCTCCTCACTTTGTCGATCTGCTACCACCTTGGTTTTGGCGGAACACGATTCCGGTTCCATCAATGCCGCTTCCCTTAGCGCTATAGCGGCTGCCGCTTCCTTGAGCAAACACGCTTCCATTTCCCTCCTCTTGGCTGGCTCTGGGCCTTCGCTTCATCAAGCTGCTCAACATGCTGCCTCTTGCCACCCATCTATTTCTCAGGTGCTTGTTGCTGATTCTGATAAATTTACATACCCCTTGGCAGAACCTTGGGCTCAGTTAGTCCAATTGGTTCAACAGAAGAATGGGTATTCTCATGTAATTGCGGCTTCAGGTTCTTTTGGGAAAAACATCCTTCCACGCGCTGCCGCTCTTTTAGATGTTTCTCCGGTTACTGATGTCATAGCTATATCTGAATCTCGACAATTTGTGAGGCCCATATATGCTGGCAATGCGCTTTGTACAGTTAGATACACAGGAGCTGACCCTTGTATGTTGACCATAAGATCTACATCATTCCCAGTGCCTGCAAAATCCGTTGAGTTGGCATCAAATAAGTCTGCTATATCTCAGGTTGATCTCTCAATGCTTGGTGGAGATTCTATTGGAAAATCTAGATATGTAAAGCAAACATCTCAGGAAGCAGAATGTCCTGATCTTGCGAATGCACGTGTTGTTGTCACTGGAGGACGTGGTTTGAAAAGCGCTGAGAACTTCAAAATGATTGAGAAGCTTGCCAAGAAACTTGGTGCTGCAGTTGGTGCCACACGTGCTGCTGTTGATGCTGGATTTGTTCCCAATGACCTTCAGGTTGGACAAACTGGTAAAATTGTAGCACCAGAACTATATATGGCTTTTGGTGTATCAGGAGCCATTCAACATTTGGCAGGAATCAGAGATTCCAAGGTTATTGTGGCTGTGAATAAAGATGCAGATGCACCAATTTTTAAGGTTGCTGACTATGGAGTCGTTGGGGATCTTTTTGAGGTTATACCTGAGTTGCTTGAAAAGCTTCCTGAAAGTAAGTAA 1089 45.18 MIARTLFTAFKTSILPSSSSQLLPLFSSSLCRSATTLVLAEHDSGSINAASLSAIAAAASLSKHASISLLLAGSGPSLHQAAQHAASCHPSISQVLVADSDKFTYPLAEPWAQLVQLVQQKNGYSHVIAASGSFGKNILPRAAALLDVSPVTDVIAISESRQFVRPIYAGNALCTVRYTGADPCMLTIRSTSFPVPAKSVELASNKSAISQVDLSMLGGDSIGKSRYVKQTSQEAECPDLANARVVVTGGRGLKSAENFKMIEKLAKKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGIRDSKVIVAVNKDADAPIFKVADYGVVGDLFEVIPELLEKLPESK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23951986 23956179 + PI0005309.1 Cmetu04g0908 353352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0908 362 Pfam Electron transfer flavoprotein FAD-binding domain 239 319 IPR014731 -
Cmetu04g0908 362 SUPERFAMILY DHS-like NAD/FAD-binding domain 238 358 IPR029035 -
Cmetu04g0908 362 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 200 - -
Cmetu04g0908 362 PIRSF Electra_flavoP_a 32 362 IPR001308 GO:0009055|GO:0050660
Cmetu04g0908 362 FunFam Electron transfer flavoprotein, alpha subunit 233 361 - -
Cmetu04g0908 362 SMART ETF_2 36 221 IPR014730 -
Cmetu04g0908 362 Gene3D HUPs 35 220 IPR014729 -
Cmetu04g0908 362 FunFam Electron transfer flavoprotein subunit alpha, mitochondrial 35 231 - -
Cmetu04g0908 362 Gene3D - 234 360 - -
Cmetu04g0908 362 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 34 359 IPR001308 GO:0009055|GO:0050660
Cmetu04g0908 362 Pfam Electron transfer flavoprotein domain 36 213 IPR014730 -
Cmetu04g0908 362 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 302 328 IPR018206 -
Cmetu04g0908 362 CDD ETF_alpha 36 213 IPR033947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0908 K03522 - - csv:101217942 628.246
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32