Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0927 ATGGAGCCTTCTCTTGAACTTTCAGAAACGCCTGAGCAGATTATACTACGCTGGGATTCCGCCGCACCCGAGGAGGTCAAAGATAAGATGATTTTTGACTCCGATAGGGAAGAGATCGACCGTTACTTGCAGGCTGTCGATGAAATCCAGAGGTCTATGTCCTCTGCTCCCGTTTCTGACGATCACAACAAAGCTGATTCCACTATGCAGATCGCCATGGCTAGGCTTGAAGATGAGTTTCGTCACATTCTCTCCAGTCATACCACTCCGATCGAGGTTGAGTCGCTTACTGATCCCAGTCCCTCTTCTCGTTCTATGTCCACTAGTGGGAGTGGTGCGTTCGAGGATGAAAACGACGATGAACCCGACTTACAGGAAGTTCAGCTTGACTTAACAGGTAGTCCAAGTTTTGGGTCCAGTGGTCGATCCAGCTACCGGGCGACTAGCAGTATTCGTGAAATTGATCTCATACCTTCCGATGCGGTTATTGATCTACGAAGTATTGCTGAGAGGATGATATCGGCGGGTTACCTACGTGAGTGCATCCAAGTTTATGGCAGCGTGCGGAAGTCCACCTTCGATTCCAGCTTCCGGCGGCTCGGAATTGAGAAACTAAGCATTGGAGATATCCAGAGGCTGGATTGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCAGCTAAGGTTTCTATTAGGACTTTGTTTTCCAGTGAGAAGAAACTTTGCGAGCAAATTTTTTATGGCATAGGGACCGCCATAGATGATGCTTGTTTCATGGAGACTGTAAAAGGTCCTGTCACTCAGTTGTTCAATTTCGCCGAGGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCATGATGCCTTGACGGAGTTGATACCTGACATTGATGTGATATTCGAATCAAAATCCGCGGAGTATATTCGGATTCAGGCGGCGGAGATAGTGTCGCGGCTAGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAATGCAGTGCTGCGGGAGCCGTCGCTGCATCCAGTTCCCGGCGGGACGCTTCATCCGTTAACAAGGTACGTAATGAACTATGTGAGTCTGATTTCGGACTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCGACGGGCTCGAGGTACTCGGCCGACCCCTCAATTCCAGATATGGACTTCGGTGAGCTAGAGGGAAAAACGCCATTAGCGCTCCATCTTATATGGAGTATCGTGATTCTGCAATTCAATTTGGAGGGAAAGTCCAGGCACTACAGAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAAAAGATAAAAGGATCCCCGGAGTTGCGAGAAATGATCGGAGATGTTTATCTGAAAAGACTTACCGGGAAGTATCGACAGGCGGCGACAAATTACGAGAGAACAACGGTTGAATGTGGGGGGAGCTTATCTTCCGGCCCTGCAAAGAGCCTAATTAGAGATAGATTCAAGACTTTCAACGCCATGTTTGAGGAGGTTCACAGGATACAATCATCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTACGCATATCCATAATCGAGAAGTTGATCCCAGCTTACAGGTCGTTTCTTGGGCTCCATGGCCACCACATAGAGAGTGGAAGACACCCCGAAAATTACATCAAATACACGGTTGAGGAACTCGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCTGTAACCCATAACTTGAGAAGGAGATCTCACTGA 1797 48.14 MEPSLELSETPEQIILRWDSAAPEEVKDKMIFDSDREEIDRYLQAVDEIQRSMSSAPVSDDHNKADSTMQIAMARLEDEFRHILSSHTTPIEVESLTDPSPSSRSMSTSGSGAFEDENDDEPDLQEVQLDLTGSPSFGSSGRSSYRATSSIREIDLIPSDAVIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTELIPDIDVIFESKSAEYIRIQAAEIVSRLAEAVRGTLSEFENAVLREPSLHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPSIPDMDFGELEGKTPLALHLIWSIVILQFNLEGKSRHYRDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRLTGKYRQAATNYERTTVECGGSLSSGPAKSLIRDRFKTFNAMFEEVHRIQSSWLIPDSQLREELRISIIEKLIPAYRSFLGLHGHHIESGRHPENYIKYTVEELENAILDFFEGCSVTHNLRRRSH 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15738148 15739979 + PI0028573.1 Cmetu04g0927 353371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0927 598 Gene3D Exocyst complex component Exo70 125 594 - -
Cmetu04g0927 598 Gene3D Exocyst complex component Exo70 14 116 - -
Cmetu04g0927 598 SUPERFAMILY Cullin repeat-like 11 585 IPR016159 -
Cmetu04g0927 598 MobiDBLite consensus disorder prediction 87 121 - -
Cmetu04g0927 598 Pfam Exo70 exocyst complex subunit 224 581 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmetu04g0927 598 MobiDBLite consensus disorder prediction 88 113 - -
Cmetu04g0927 598 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 586 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0927 K07195 - - csv:101204229 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1922 Cmetu-Chr3:958144 Cmetu04g0927 Cmetu-Chr4:15738148 3.50E-30 dispersed
Cmetu04g0927 Cmetu-Chr4:15738148 Cmetu12g0357 Cmetu-Chr12:3123572 3.50E-119 dispersed
Cmetu08g1948 Cmetu-Chr8:17874076 Cmetu04g0927 Cmetu-Chr4:15738148 8.90E-97 transposed
Cmetu10g0057 Cmetu-Chr10:20986075 Cmetu04g0927 Cmetu-Chr4:15738148 3.00E-97 transposed
Cmetu02g0875 Cmetu-Chr2:12661619 Cmetu04g0927 Cmetu-Chr4:15738148 1.50E-112 wgd
Cmetu04g0927 Cmetu-Chr4:15738148 Cmetu09g0691 Cmetu-Chr9:8337023 3.70E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g0057 . 12 634 EXO70 exocyst subunit family AT5G03540 73.6 5.9e-269 923.7
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G03540 71.4 1.5e-267 919.1
Cmetu08g1948 . 1 638 EXO70 exocyst subunit family AT5G52340 80.1 2.0e-298 1021.5
Cmetu10g0057 . 14 634 EXO70 exocyst subunit family AT5G52340 71.1 1.0e-254 876.3
Cmetu08g1948 . 145 631 EXO70 exocyst subunit family AT5G52350 63.1 2.2e-174 609.4
Cmetu10g0057 . 134 634 EXO70 exocyst subunit family AT5G52350 60.4 5.2e-168 588.2
Cmetu12g0418 . 1 630 EXO70 exocyst subunit family AT5G58430 66.6 2.3e-246 848.6
Cmetu12g0418 . 1 629 EXO70 exocyst subunit family AT1G07000 52.0 2.2e-174 609.4
Cmetu07g1382 . 77 676 EXO70 exocyst subunit family AT5G13150 54.4 1.9e-174 609.8
Cmetu09g0691 . 92 703 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-191 664.8
Cmetu04g0927 . 9 597 EXO70 exocyst subunit family AT1G72470 63.9 2.6e-205 712.2
Cmetu04g0927 . 9 595 EXO70 exocyst subunit family AT1G54090 61.3 1.1e-200 696.8
Cmetu04g0927 . 9 596 EXO70 exocyst subunit family AT3G14090 62.8 2.9e-209 725.3
Cmetu02g0875 . 13 651 EXO70 exocyst subunit family AT5G50380 62.7 2.8e-229 792.0
Cmetu12g0357 . 25 663 EXO70 exocyst subunit family AT5G50380 62.6 8.9e-228 786.9
Cmetu03g1613 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 7.1e-294 1006.5
Cmetu10g1827 . 43 586 EXO70 exocyst subunit family AT3G55150 51.5 9.6e-152 534.3
Cmetu11g2447 . 35 600 EXO70 exocyst subunit family AT3G55150 50.1 1.2e-149 527.3
Cmetu10g1827 . 12 586 EXO70 exocyst subunit family AT2G39380 52.0 2.9e-156 549.3
Cmetu08g0872 . 27 632 EXO70 exocyst subunit family AT3G09520 54.6 4.5e-178 621.7
Cmetu11g2447 . 33 610 EXO70 exocyst subunit family AT5G59730 50.2 5.1e-153 538.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007044 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 36