Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g0980 ATGCAGGGACGAGCCGCCGTCAGTCGTATGCGCTCGAGTAGTGAAAGATCGTCTAGCTCCGCTTTTCAACTTGATGTTAAAGAAGATATAGGAGCGGAGAGTGATGAGGAGGAGATAAGCAGAGTTCCGCAGATCTGCGGCAACTCCGGCTCCACCGTCAGCATTTCAGCGCCAGGTAAAGCGCCTGCATCAGATAGCGTAAGGAGCAGAGGACGAAGTGCGGCTGAGAAAGAAAGCAAAAGGCTGAAGAGATTGTTAAGGAACAGAGTTTCAGCACAACAAGCAAGGGAAAGGAAAAAGGCGTACTTAAGCGAGTTGGAAAAAAGAGCAACAAATTTGGAGAAGAGGAACTCGGAGCTTGAAGAGAAGTTGTCCACGTTACAGAATGAGAATCAAATGCTTAGACACATACTAAAGAACACAACAACCACCAAGAGAAGTGATGGCGACGCTGCTAAATGCTAA 465 47.53 MQGRAAVSRMRSSSERSSSSAFQLDVKEDIGAESDEEEISRVPQICGNSGSTVSISAPGKAPASDSVRSRGRSAAEKESKRLKRLLRNRVSAQQARERKKAYLSELEKRATNLEKRNSELEEKLSTLQNENQMLRHILKNTTTTKRSDGDAAKC 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30213577 30216472 - PI0016656.1 Cmetu04g0980 353424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g0980 154 MobiDBLite consensus disorder prediction 70 99 - -
Cmetu04g0980 154 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Cmetu04g0980 154 Gene3D Single helix bin 99 140 - -
Cmetu04g0980 154 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 6 149 IPR044280 GO:0000981|GO:0045944
Cmetu04g0980 154 MobiDBLite consensus disorder prediction 44 59 - -
Cmetu04g0980 154 SMART brlzneu 76 140 IPR004827 GO:0003700|GO:0006355
Cmetu04g0980 154 MobiDBLite consensus disorder prediction 1 24 - -
Cmetu04g0980 154 PRINTS cAMP response element binding (CREB) protein signature 75 91 - -
Cmetu04g0980 154 PRINTS cAMP response element binding (CREB) protein signature 93 113 - -
Cmetu04g0980 154 PRINTS cAMP response element binding (CREB) protein signature 113 130 - -
Cmetu04g0980 154 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 141 IPR004827 GO:0003700|GO:0006355
Cmetu04g0980 154 Pfam bZIP transcription factor 76 137 IPR004827 GO:0003700|GO:0006355
Cmetu04g0980 154 CDD bZIP_HY5-like 81 132 - -
Cmetu04g0980 154 Coils Coil 75 137 - -
Cmetu04g0980 154 SUPERFAMILY Leucine zipper domain 80 138 IPR046347 GO:0003700|GO:0006355
Cmetu04g0980 154 MobiDBLite consensus disorder prediction 1 99 - -
Cmetu04g0980 154 FunFam Transcription factor HY5 99 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g0980 K16241 - - csv:101205952 258.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1202 Cmetu-Chr3:4279095 Cmetu04g0980 Cmetu-Chr4:30213577 1.10E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g147 . . . . . . . . . . Cma01g01233 Cma09g00832 Car01g01054 Car09g00746 Sed05g2538 Cpe06g00663 Cpe02g00683 Bhi09g03480 Tan01g4352 Cmetu04g0980 . Hepe01g1419 Mch11g1032 . Cla11g01727 Cam11g1797 Cec11g1818 Cco11g1824 Clacu11g1956 Cmu11g1766 Cre11g2174 Cone6ag0180 Cone9ag0205 Cone14ag1040 Cone15ag1029 Lsi04g02035 Csa04g02307 Chy07g00043 Cme07g00555 . . . . . . . . . Cmo01g01286 Cmo09g00825 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014246 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 2 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7729 PF00170 bZIP_1 7.40E-13 CL0018 Cmetu TF