Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1048 ATGACCGTGAAGTTTCCGGCTCATGGGTTTCGAATAGGGAGTGTTTGGGACGATGGAGTTCATTCCCACGTGAAACGGGTGGAGATTGTTTATGACGAAGAATACATCTATTCTGTTCGTATTGTGTATATTGATGAAAATGGGATGAAAGTGGAATCCATTCATGACGGACACAGAGACCATATTGGGTCTACTAAACGAGAGGTTATTGATTTACCATCTCCAACTCAGTTTCTCACTTCAATTCATGGCTTCCAAACCCCATGGAAGAGTAAAATGGACGATATTCGTACCAGCTCTCACCCCCCATTGATGTATAAACTGAAGATTAATTCGCTGACTTTCCAAACCAACTATGGACGTACTTTTGGCCCATTTGGTAATCAGAAAGCTGAAGGAACCGGATTTTCAATCCCGCTTAAGCCAGCAAAGATTGTGGGATTCCATGGCTGGAGTGATGGGAAATGCCTCACTGCAATTGGAGTATACGTTCAACCAATTACAGAAAGCATGCGTCAACTCCAACTTGAGCCAGAGCCAGAGCCCGAGCCGGAGCCCGAGCCAGAGCCCCATGAGGGTAGTTTTAGCTTGGGAGACTATGGGCGTGAAGATGGGGAATGTTGGGTGGAGAACTTTCGAGCAATAAAACGATTGGTAATTCATAGTAATGAGGAGTGGATCATTTCCATACAAATGGAATATGAGGATGAGAATGGGAAATTAGTGCTATCCAAAAAACATGGTGGAGATGGAGGTTCCAAATCAGAGGTTGTTTTGGAAGATCCAGATGAACATCTTGTTACAATTAACGGATACTATGACAACTCACTTGAATCCGAATGTTGTACCAACATGATTCGCTCCCTGACTGTGACAACCAATAATAAATCTTATGGGCCATTTGGGGTTGAACATGGAACCAAATTTTCATTCCCAACACATGAGCGATTGAAGGTGGTTGGCATCAGTGGCAGATCTGATTCCTATCTCAATGCCATTGGACTCAACGTAGTCCGTACACTTTAA 1026 43.57 MTVKFPAHGFRIGSVWDDGVHSHVKRVEIVYDEEYIYSVRIVYIDENGMKVESIHDGHRDHIGSTKREVIDLPSPTQFLTSIHGFQTPWKSKMDDIRTSSHPPLMYKLKINSLTFQTNYGRTFGPFGNQKAEGTGFSIPLKPAKIVGFHGWSDGKCLTAIGVYVQPITESMRQLQLEPEPEPEPEPEPEPHEGSFSLGDYGREDGECWVENFRAIKRLVIHSNEEWIISIQMEYEDENGKLVLSKKHGGDGGSKSEVVLEDPDEHLVTINGYYDNSLESECCTNMIRSLTVTTNNKSYGPFGVEHGTKFSFPTHERLKVVGISGRSDSYLNAIGLNVVRTL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29011995 29013962 + PI0022528.1 Cmetu04g1048 353492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1048 341 MobiDBLite consensus disorder prediction 172 197 - -
Cmetu04g1048 341 Gene3D - 1 164 IPR036404 -
Cmetu04g1048 341 ProSiteProfiles Jacalin-type lectin domain profile. 2 166 IPR001229 -
Cmetu04g1048 341 PANTHER JACALIN-RELATED LECTIN 3 12 169 - -
Cmetu04g1048 341 SUPERFAMILY Mannose-binding lectins 200 337 IPR036404 -
Cmetu04g1048 341 SUPERFAMILY Mannose-binding lectins 2 166 IPR036404 -
Cmetu04g1048 341 ProSiteProfiles Jacalin-type lectin domain profile. 194 339 IPR001229 -
Cmetu04g1048 341 CDD Jacalin 213 337 IPR033734 GO:0030246
Cmetu04g1048 341 Gene3D - 187 337 IPR036404 -
Cmetu04g1048 341 CDD Jacalin 13 165 IPR033734 GO:0030246
Cmetu04g1048 341 Pfam Jacalin-like lectin domain 13 166 IPR001229 -
Cmetu04g1048 341 Pfam Jacalin-like lectin domain 212 337 IPR001229 -
Cmetu04g1048 341 SMART Jacalin_2 13 166 IPR001229 -
Cmetu04g1048 341 SMART Jacalin_2 205 339 IPR001229 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1048 Cmetu-Chr4:29011995 Cmetu04g1051 Cmetu-Chr4:29040544 1.40E-56 dispersed
Cmetu04g1048 Cmetu-Chr4:29011995 Cmetu04g3249 Cmetu-Chr4:29021152 1.60E-57 proximal
Cmetu04g1655 Cmetu-Chr4:28996750 Cmetu04g1048 Cmetu-Chr4:29011995 1.70E-23 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001431 0 9 1 0 0 2 0 2 3 3 0 3 1 3 3 0 3 0 0 3 2 2 2 3 4 5 3 6 9 0 72