Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1063 ATGGGGAAGGCTACCGATTTTTCGTCTAATCATCGTTCGCCAAGTGGAACTAGTTTTACCGGCGATAATACCAACAGCTCCGAGTTCCGGCGGAATAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGAGGTGAGCCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTATCGTCGTCTTCGTCATCGTTGTCTTCGCTGGCGGTTTCGGCTACAGAAACCCCTGCTCCTGCCTCGCCGCCGTCGGACAACTTTACGTCTTCCGAGAACTGCGACGCGAATGACGGTAATGCAACGGCGTCGAAGAAACAGGCTTGGAACAAGCCTACGAATGGCGTCGTTGAGGGTGGTTCTGTAATGGGGGCAGACTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAATTAACAGTTGATTCTCCTCCGAAGGTTACCGTCGAAGTAGCAGTACCCCCTTCTCAGAATCCAGTGGTTCCTCGGAATAATAGATCCTCAAGGCGGGGTGGTGGTGGTGGTGGCAGCTCAGTGGGAGGGCCTGCACGAGGCGGCTTTTATCGCCCTCCGCCACCTCCACCACCTTTTCCTCTATTTCAAGTTCCTCCAAATAGTTATTGTAATATGATACCAGCAATTCCTGATCCTTCTTCAGGTGAACCACTGTTCAGGAGTGGTAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCACTTAAATTTTGGTACTGATCACCGGAACTTCTTTCCTAGGGGGGGGAATTTAGCCCTCCATCCCCGTGGTGATAGTCACTACCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATGTATCCTAATGCTCGAGATGCTCATTTTCAGCCGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTTCACTGGTCAGTTTCCCCAAGGTGTTAGACCTCATGTGAATCCTATGGCTCATCCAGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGGCTTACAGAGGCGGCATGCCTTTCATGCCACGACCTGCAATGAACTATCCTACTGTAGATCCCACTCTGTCTGCATCAATAGTCAAGCAGATTGAATATTATTTCAGCGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCAATTTCTCTGATAGCTACTTTTCCTATGGTACTGAGTTTGACAAACAATATTCAATGGATAGTAGAATCCTTGAGAGCGTCTACTGAAGTGGAAGTTCAGGATAATAAGATCAGACGGAGAAATGAGTGGAAGAAATGGACAACAAAATCCAATTGGTTTAGAACCGATTTGGTCTCTTCTACTCCAAGTGGATCAAGTCATGGTAGTCTAGCAACTTCTTTTCAGAGGGTCAGAGTGGATGAAGGTATGAACCAAAGTATGACCAATGATAATGATCCTCATAACACTGAGCGTACTACTACTGAGTTACAATCTTCCAAGTCAGGTGATCGTTCAAAACTTACTAATGGTGAGGCGAATCAGGATGTTCAGACTGATATCTGA 1560 48.21 MGKATDFSSNHRSPSGTSFTGDNTNSSEFRRNNLQSPWAQVVRGEPESISPVDQSQLSSSSSSLSSLAVSATETPAPASPPSDNFTSSENCDANDGNATASKKQAWNKPTNGVVEGGSVMGADSWPALAESARASPKLTVDSPPKVTVEVAVPPSQNPVVPRNNRSSRRGGGGGGSSVGGPARGGFYRPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPLFRSGNWDPRAVAGFVPHLNFGTDHRNFFPRGGNLALHPRGDSHYHNNRGGKRGQDRGMYPNARDAHFQPHRPHTRGFMRPLPPFTGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGGMPFMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRASTEVEVQDNKIRRRNEWKKWTTKSNWFRTDLVSSTPSGSSHGSLATSFQRVRVDEGMNQSMTNDNDPHNTERTTTELQSSKSGDRSKLTNGEANQDVQTDI 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29786340 29790768 - PI0008659.1 Cmetu04g1063 353507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1063 519 PANTHER LUPUS LA PROTEIN-RELATED 122 487 IPR045180 -
Cmetu04g1063 519 MobiDBLite consensus disorder prediction 152 199 - -
Cmetu04g1063 519 MobiDBLite consensus disorder prediction 1 39 - -
Cmetu04g1063 519 MobiDBLite consensus disorder prediction 185 199 - -
Cmetu04g1063 519 CDD LAM 362 431 - -
Cmetu04g1063 519 Pfam La domain 362 417 IPR006630 -
Cmetu04g1063 519 SUPERFAMILY Winged helix DNA-binding domain 352 440 IPR036390 -
Cmetu04g1063 519 FunFam la-related protein 1B isoform X2 348 438 - -
Cmetu04g1063 519 SMART la 356 432 IPR006630 -
Cmetu04g1063 519 Gene3D - 350 442 IPR036388 -
Cmetu04g1063 519 MobiDBLite consensus disorder prediction 476 519 - -
Cmetu04g1063 519 MobiDBLite consensus disorder prediction 1 121 - -
Cmetu04g1063 519 MobiDBLite consensus disorder prediction 49 108 - -
Cmetu04g1063 519 ProSiteProfiles La-type HTH domain profile. 352 441 IPR006630 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1063 K18757 - - csv:101220887 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1063 Cmetu-Chr4:29786340 Cmetu04g2543 Cmetu-Chr4:3566518 1.60E-40 dispersed
Cmetu04g2617 Cmetu-Chr4:3555533 Cmetu04g1063 Cmetu-Chr4:29786340 2.60E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44