Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1134 ATGGGGATTAAATTTGCAAAGCCAAATCAGGGGAAGGTGGAAAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGTAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGATACGATCTTGACATGTCATACATCACTGATCATGTATTGGCAATGTCATTTCCTGCAGAACGGATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCTGTATTGGACATGAGGCATCAAGGACACTACAAGATCTATAATCTCTGCATTGAAGAATCATATGATCCATCACATTTTCATGGGCGCGTGGAGTCATTTCCTTTCGATGATAATCATGTTCCACATCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTATGTGCCTATTTGGTTTACTGTGGCATGTCAGTGGAGGATGCCCTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGATACGTGGGCTACTGGTCAAGGTGCCTTTCCCTTCCCAAGGGAGTTTATAATGGACCTCCCGAGGTGAAGTTGCCCAAACCGTGTAGGAGGGAATTGCAAAGAATTCGACTCTATGACACGGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAGCTATACCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAAAGAAGTAATAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAGGGGAACAAGTCCGAAGTAGAGCCTCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACAACAAAACCTGCCTTGATTACAATTTTGAGAAGCCTCTACCACTAACTGGAGATGTGCGCATCATCTTCTACGCAAAGATGTTTGGAGGTCGTCTCTTCTACGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTACTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCGCTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGACTACATCCGATGACGATGATCCTCCAAATGATTTGTCTTAA 1248 43.43 MGIKFAKPNQGKVENLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPHLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSRCLSLPKGVYNGPPEVKLPKPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYNKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSTTSDDDDPPNDLS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8355788 8360853 - PI0021678.1 Cmetu04g1134 353578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1134 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cmetu04g1134 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 184 IPR000387 GO:0016311|GO:0016791
Cmetu04g1134 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cmetu04g1134 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Cmetu04g1134 415 Pfam Tyrosine phosphatase family 144 186 IPR026893 GO:0004721
Cmetu04g1134 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Cmetu04g1134 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 394 IPR035892 -
Cmetu04g1134 415 Gene3D - 274 397 - -
Cmetu04g1134 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Cmetu04g1134 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791
Cmetu04g1134 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Cmetu04g1134 415 Pfam C2 domain of PTEN tumour-suppressor protein 317 392 IPR014020 -
Cmetu04g1134 415 SMART PTEN_C2_2 223 394 IPR014020 -
Cmetu04g1134 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 29 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1134 K01110 - - csv:101212127 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1134 Cmetu-Chr4:8355788 Cmetu08g1753 Cmetu-Chr8:19823445 2.10E-38 dispersed
Cmetu04g1134 Cmetu-Chr4:8355788 Cmetu01g2130 Cmetu-Chr1:635708 2.50E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006631 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 38