Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1213 ATGCTTCATTCAGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAATGTACCTAAAGTAAAATGTGAGGAGGAAGTTGATGAGGATAAGTTGAAATATCCGTTTCCTGAGTTGGTTCCTTCCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTATGGAATTATGTCTGCCGAGCTTTGTCTACTTGCAAGGGGAACAAATTGGAAATGATGAAATTGGGTCCTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTTAATACTGCACTACCAACCATTGTGTATTTAGAAATCCCAAATGGAGGCAGAATTGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATGTATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCGTTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCGCGTGCTGCTTTTAGGCTTTATTGTGTGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGAATGATGAGTGATCTAGAGCCACAGCTTATTGGGGAACCCCTAAAGATTGACGTAGAACCACCTGAGGTAGATGTAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGATAATAATGTGACCATGAGATTCCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCACTTTTGAAGATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCGGGATCTTTTTCTCGTGGAGTTGTGACAATGCGATGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTCCTGGAGAAACATATCAAACACGAAATCATAGAAAATAACCAATTAGTTCATGCCATACATGATTGTGAAGGCAACAAGGATCACATGCACGAGCCTCGTAAATCTGCTTCAATTGCATGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGACTGCTCTTCTTTTGCTCAGGGGATGGGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCAAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGGAATAGTGACAGTCTTTCATATGCAAACATCCCTGCCATTAGAAGAGTAGGTAGAGAGGACCCTGTACCAATGAATGGGTTCAAGGCATCCTTACACCCAGCGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGGTTGCATAGGAATAAAATGACACCTTTTACTGGATTGACTGAAGTAGATGGGAACAATGGTGGCCTATCCAAGGCTAGTTTATCCATTGTTACCCCGCCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTAGAGGACATACACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTGGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACCTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTTGGGTGTGATCGAAGGCAGGGCCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGTATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAATGGGTCTCCGCAAGGTATAGCAAATCCACGGATACCTTGA 2346 43.35 MLHSVVAARQTCSLLAVTCGNVPKVKCEEEVDEDKLKYPFPELVPSGRLEVRVLANPSKDEFSRIMELCLPSFVYLQGEQIGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLMYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCVGSNYGLPGIADDRMMSDLEPQLIGEPLKIDVEPPEVDVGEGEDEDGSLETLPAISIHDNNVTMRFLICGVPCTPDACLLRSLEDGLNALLKIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAIHDCEGNKDHMHEPRKSASIACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDGNDKHSDQLLVSVLPSWFKPPTPSRKRVEPSQGIRNSDSLSYANIPAIRRVGREDPVPMNGFKASLHPARKRLKVASMRPVPRLHRNKMTPFTGLTEVDGNNGGLSKASLSIVTPPKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHTRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGIANPRIP 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15011742 15016829 + PI0029137.1 Cmetu04g1213 353657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1213 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677
Cmetu04g1213 781 SMART ARID_2 591 694 - -
Cmetu04g1213 781 Gene3D - 591 694 IPR036431 GO:0003677
Cmetu04g1213 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 764 IPR013083 -
Cmetu04g1213 781 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Cmetu04g1213 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677
Cmetu04g1213 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 775 IPR042293 -
Cmetu04g1213 781 CDD PHD_ARID4_like 704 755 - -
Cmetu04g1213 781 CDD ARID 596 694 - -
Cmetu04g1213 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1213 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1064 Cmetu-Chr1:28204608 Cmetu04g1213 Cmetu-Chr4:15011742 6.20E-294 dispersed
Cmetu01g0203 Cmetu-Chr1:28159804 Cmetu04g1213 Cmetu-Chr4:15011742 8.40E-299 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1114 . 19 384 ARID Transcription Factor Family AT1G04880 55.9 1.1e-104 377.5
Cmetu06g1465 . 208 477 ARID Transcription Factor Family AT1G20910 61.0 2.5e-89 326.2
Cmetu07g1207 . 16 310 ARID Transcription Factor Family AT1G76110 68.5 2.1e-113 406.0
Cmetu06g1465 . 187 507 ARID Transcription Factor Family AT1G76510 59.5 7.6e-108 387.9
Cmetu04g1213 . 1 770 ARID Transcription Factor Family AT3G43240 59.7 3.6e-267 917.9
Cmetu01g0203 . 2 771 ARID Transcription Factor Family AT3G43240 57.5 2.1e-259 892.1
Cmetu01g1064 . 32 771 ARID Transcription Factor Family AT3G43240 59.1 3.6e-259 891.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7745 PF01388 ARID 5.60E-14 CL0123 Cmetu TR