Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1222 ATGGGTGGTCGCTCAGTGTTCACTTTGGCTGAGGTTGCTTCCCATGACAATCGCAACGATTGCTGGTTGATCATTGAAGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCACTGCCAGAGCAATGATGGAAGAATTTTATGTAGGCGATATCGATAGCTCAACTATTCCTGCAAAAAGAGAGTATACTCCTCCAAAGCAACCCCTCTACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTTGCTCCCTTGTTAATTTTGGGCTTGGCTTTTGGCATCCACCTCTATATCAAAACAACTTAA 402 43.53 MGGRSVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSTARAMMEEFYVGDIDSSTIPAKREYTPPKQPLYNQDKTPEFIIKVLQFLAPLLILGLAFGIHLYIKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17774539 17777024 + PI0002215.1 Cmetu04g1222 353666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1222 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037
Cmetu04g1222 133 Gene3D - 3 85 IPR036400 -
Cmetu04g1222 133 SMART Cyt_b5_2 7 80 IPR001199 -
Cmetu04g1222 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 89 IPR036400 -
Cmetu04g1222 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Cmetu04g1222 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Cmetu04g1222 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Cmetu04g1222 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Cmetu04g1222 133 PANTHER CYTOCHROME B5 4 129 - -
Cmetu04g1222 133 FunFam Cytochrome b5 type B 3 84 - -
Cmetu04g1222 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Cmetu04g1222 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1222 K23490 - - csv:101212882 269.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1222 Cmetu-Chr4:17774539 Cmetu06g2442 Cmetu-Chr6:2639169 4.90E-50 dispersed
Cmetu04g1222 Cmetu-Chr4:17774539 Cmetu05g1957 Cmetu-Chr5:16573017 4.80E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156