Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1271 ATGGAAGTCCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCGGTTGCGGCGGTGGTGGTACTGCTGGCGGCAGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTATCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGCAAAGGCTTTTGCTTCTCAGGCATGAAGCTCGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCTTCCTCGCCCTTGAACGAAAAGAGCAGTGCTTTTAGATCTACCTACACTGGCCACACCCCATTCATTTTAACCTCCGTTTTCGCCATTGCTGCTGTATTCGAAGCTTTTGCTCGGGTCTGGTAG 540 49.26 MEVLRTRVGGSGLLVAVAAVVVLLAAVPEVSATRWTVGGNMGWNTNVNYTIWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCFSGMKLAIHVEHLPPPPSSSPLNEKSSAFRSTYTGHTPFILTSVFAIAAVFEAFARVW 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8296370 8298447 - PI0029027.1 Cmetu04g1271 353715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1271 179 Pfam Plastocyanin-like domain 43 125 IPR003245 GO:0009055
Cmetu04g1271 179 SUPERFAMILY Cupredoxins 32 131 IPR008972 -
Cmetu04g1271 179 ProSiteProfiles Phytocyanin domain profile. 33 133 IPR003245 GO:0009055
Cmetu04g1271 179 Gene3D - 31 134 IPR008972 -
Cmetu04g1271 179 PANTHER BLUE COPPER PROTEIN 33 144 IPR039391 GO:0009055
Cmetu04g1271 179 FunFam Lamin-like protein 31 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1271 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1271 Cmetu-Chr4:8296370 Cmetu09g0471 Cmetu-Chr9:2583175 8.80E-18 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1793 . 24 166 Phytocyanin Superfamily AT1G48940 52.4 1.1e-36 150.2
Cmetu03g1063 . 15 169 Phytocyanin Superfamily AT2G25060 55.1 5.0e-45 177.9
Cmetu04g1271 . 13 179 Phytocyanin Superfamily AT5G15350 54.2 4.9e-50 194.5
Cmetu03g1063 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 1.3e-45 179.9
Cmetu12g1793 . 24 166 Phytocyanin Superfamily AT1G48940 52.4 1.1e-36 150.2
Cmetu03g1063 . 9 170 Phytocyanin Superfamily AT5G25090 52.7 2.5e-39 159.1
Cmetu03g1063 . 15 169 Phytocyanin Superfamily AT2G25060 55.1 5.0e-45 177.9
Cmetu03g1063 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 1.3e-45 179.9
Cmetu04g1271 . 13 179 Phytocyanin Superfamily AT5G15350 54.2 4.9e-50 194.5
Cmetu05g1906 . 29 224 Phytocyanin Superfamily AT1G08500 59.6 2.3e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38