Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1279 ATGAGAAAGACCGGAAGAGGAGGCCGGTGGACTGATCAGAATCGAAACCAAGAGGTTTGGGTCGCCAAACACACGAATCAATCACACAATCACTCTTCTACTTCCGCCTCACAACCCTCCCACCTCTCTAATCCTCCTCCTACCGGTCGTAATTTCAATTACGAGCATCGCAATCCCCGCCGTCCCCGTCCCCGTCCCCGTCCCCAACCTGTCCACAAACCGGAGTTGACTGCTTTGGCCGATGGAATAGAATCTTTCACTTTTGACGAAAAGCCTGTGGATTTCGATGTTGCGAAATCTAACTGTGAGGTTAAAGAACAGACACCTGGAAATTCTTCCTCAACTGAGGCTGCGGATGATGTTTATAGTAGGTTAGAGATGCTGCAGCGGAGTTCCGAGGAGCCGGAGTTGTCAGAGGAGCAGCTCAGGATTAATGATCAGTTGCAGGAAGATGAGTTGCTGGCTTTGGAGTCCATATATGGAGAAAATGTCTATATCCTCGATGAATATAAAGGGCAGCGCCGTTTCCAGATTTTCATACACATTGAGAATCCTGGCGATATTACTATAACTGCAAAGCTTAATTCATCTAATTCTCTTGAGATCAAAAGTCCTAATTCAGATGAATTCTCCTGCTCTTTCAATGTCAAGTATCTTAACCCCATTGTTTTGACCTGTTTATTACCAAAATCGTATCCTAGTCATCTACCTCCATATTATACAATCTCTATTCGGTGGTTGGACTCTGCTAGAATTTCTAGGCTTTGCTCTGTGTTGGATGGGATATGGAGTGAACAAGGGGGGCAGGAAGTTGTATATCAATGGGTAGAATGGCTACAAATGTCATCTCTGGCTTATCTTCAGTTAGATAAAGAGATCATGCTTGGTCCTTACGATAAGGAACATTCAGGAGATACTCGGGCGGTTTCAGGAAGTGTTTCTCCAGAAGTTGATGTTCCTGCTATTATAAATTATGACAATCAGAGACGTGATGAGGACTTCTGCATGAATTTGCAAGAATGCTGCATCTGTTTAAGTCAGTATGCGGGTACAAAGTTTGTTAGATTGCCATGTAAACATTACTTTTGCTGGAAGTGCATGGAGACATACTCGAGCATGCATGTCAAGGAAGGCACAGTAAGCAAACTCAATTGTCCAGATGCCAAATGTGATGTTATGGTTCCTCCTGGTCTTTTGAAGCAATTGCTTGGCGATGAGGAGTTTGAAAGATGGGAATCCATGATGCTCACGAAAACACTGGAATCAATGTCAGATGTTGTCTATTGCCCAAGGTGTGAAACACCCTGCCTAGAGGATGTAGATCATGATGCTCAATGCTCCAAGTGTTACTTCAGTTTTTGTACACTCTGTAGCGAGCGACGTCATGTCGGAATTGAATGTATGACTCCAGAAATGAAGCTTCGTCTTCTTGAGGAGCGTCAAAATTCATCTCAGTTAGGCAGTGAACAAAGAAGAAAGGAGCATGAGATGATAAATGAGCTTATTAGTGTCAAGGAAATACTTCGTGATGCCAAGCAATGCCCATCTTGTAAAATGGCAATATCACGGACAGAGGGTTGCAATAAGATGGTTTGCAATAACTGTGGACAGTATTTCTGTTACCGCTGTAGCAAGGCAATTGATGGATATGACCATTTCAGGGAGGGGTCATGTGAATTGTTCCCGCAAGAAGCCATTCAACAGTGGGAAGAGCGCATGAATGCACGGCAGGTATTGGGCCAGATTCAAGCTGAACTTTTTCCTGAAAATGGTCATCCATGCCCTAATTGTGGTCAACTTAATGCCAAGGTTGGGAATAACAATCACATACGTTGTTGGTCATGTCAAATCCACTACTGCTATTTATGTAGAAAAGTTGTGAAACGCAGCTCCCAACATTATGGACCCAAAGGATGCAAACAACACACAGTGGGTTGA 1938 43.7 MRKTGRGGRWTDQNRNQEVWVAKHTNQSHNHSSTSASQPSHLSNPPPTGRNFNYEHRNPRRPRPRPRPQPVHKPELTALADGIESFTFDEKPVDFDVAKSNCEVKEQTPGNSSSTEAADDVYSRLEMLQRSSEEPELSEEQLRINDQLQEDELLALESIYGENVYILDEYKGQRRFQIFIHIENPGDITITAKLNSSNSLEIKSPNSDEFSCSFNVKYLNPIVLTCLLPKSYPSHLPPYYTISIRWLDSARISRLCSVLDGIWSEQGGQEVVYQWVEWLQMSSLAYLQLDKEIMLGPYDKEHSGDTRAVSGSVSPEVDVPAIINYDNQRRDEDFCMNLQECCICLSQYAGTKFVRLPCKHYFCWKCMETYSSMHVKEGTVSKLNCPDAKCDVMVPPGLLKQLLGDEEFERWESMMLTKTLESMSDVVYCPRCETPCLEDVDHDAQCSKCYFSFCTLCSERRHVGIECMTPEMKLRLLEERQNSSQLGSEQRRKEHEMINELISVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCSKAIDGYDHFREGSCELFPQEAIQQWEERMNARQVLGQIQAELFPENGHPCPNCGQLNAKVGNNNHIRCWSCQIHYCYLCRKVVKRSSQHYGPKGCKQHTVG 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32404918 32413954 - PI0004561.1 Cmetu04g1279 353723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1279 645 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 179 574 IPR031127 GO:0004842|GO:0016567
Cmetu04g1279 645 Pfam IBR domain, a half RING-finger domain 508 547 IPR002867 GO:0008270
Cmetu04g1279 645 Pfam IBR domain, a half RING-finger domain 409 467 IPR002867 GO:0008270
Cmetu04g1279 645 CDD Rcat_RBR 590 625 - -
Cmetu04g1279 645 MobiDBLite consensus disorder prediction 10 51 - -
Cmetu04g1279 645 MobiDBLite consensus disorder prediction 1 73 - -
Cmetu04g1279 645 CDD BRcat_RBR_RNF14 420 471 - -
Cmetu04g1279 645 SMART ibrneu5 409 467 IPR002867 GO:0008270
Cmetu04g1279 645 SMART ibrneu5 496 558 IPR002867 GO:0008270
Cmetu04g1279 645 FunFam RBR-type E3 ubiquitin transferase 482 588 - -
Cmetu04g1279 645 SUPERFAMILY UBC-like 145 280 IPR016135 -
Cmetu04g1279 645 SUPERFAMILY RING/U-box 501 553 - -
Cmetu04g1279 645 ProSitePatterns Zinc finger RING-type signature. 358 367 IPR017907 -
Cmetu04g1279 645 SMART ring_2 341 388 IPR001841 -
Cmetu04g1279 645 SMART ring_2 514 597 IPR001841 -
Cmetu04g1279 645 Pfam RWD domain 147 281 IPR006575 GO:0005515
Cmetu04g1279 645 SUPERFAMILY RING/U-box 584 641 - -
Cmetu04g1279 645 ProSiteProfiles TRIAD supradomain profile. 337 563 IPR044066 -
Cmetu04g1279 645 SUPERFAMILY RING/U-box 409 471 - -
Cmetu04g1279 645 FunFam RBR-type E3 ubiquitin transferase 336 420 - -
Cmetu04g1279 645 CDD RING-HC_ITT1-like 338 394 - -
Cmetu04g1279 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 424 IPR013083 -
Cmetu04g1279 645 ProSiteProfiles Zinc finger RING-type profile. 341 389 IPR001841 -
Cmetu04g1279 645 SUPERFAMILY RING/U-box 338 422 - -
Cmetu04g1279 645 Gene3D Ubiquitin Conjugating Enzyme 138 289 IPR016135 -
Cmetu04g1279 645 Gene3D - 488 586 - -
Cmetu04g1279 645 ProSiteProfiles RWD domain profile. 151 286 IPR006575 GO:0005515
Cmetu04g1279 645 SMART RWD2001b 151 286 IPR006575 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1279 K11971 - - csv:101211646 1257.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30