Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1399 ATGGACATGGAGTCTGCTTTCAACATGCCTCTCATCAAAGACATCACTTTCAAATCCACCCCCAAACTTCATTTCGATGATTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTTGTTGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGAAGAAAAAAACAACCATTCCTCTGCTTCTCCTCCCCTGCAACTTCAACAACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAACAGATTTTGAAGACCTTGAATGGCTCTCTCATCTCGTTGCCGGTTCCACTCAAGAAGAATACTCTGCCCCACCACCGCCTTCCTCTGTTTTCTTGACACACAAACCTAAAAATCCCCTTCCCAATTTTCAATCTTGTCTCAATACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCCGAGTCTGGTCTTTAACGAATTTAATTCCTTCCCCGCTGCCGACGAAGCAATCAAAGAAGAATCCTGCAGATGAGAGCTCCGGGAGGGTCCAGGCGGCGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGCCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGACGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGGGAGAAACCCCTCTCCGGTCTGGACTTAGTGTAA 840 47.74 MDMESAFNMPLIKDITFKSTPKLHFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDEEKNNHSSASPPLQLQQHHDTDQNSNHSSTNSSEDDFWSISSTDFEDLEWLSHLVAGSTQEEYSAPPPPSSVFLTHKPKNPLPNFQSCLNTPFPSKPRTKRPKISARVWSLTNLIPSPLPTKQSKKNPADESSGRVQAARRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEREKPLSGLDLV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3899744 3900988 - PI0015895.1 Cmetu04g1399 353843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1399 279 CDD ZnF_GATA 201 250 IPR000679 GO:0006355|GO:0043565
Cmetu04g1399 279 PIRSF Txn_fac_GATA_plant 16 275 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmetu04g1399 279 FunFam GATA transcription factor 192 274 - -
Cmetu04g1399 279 MobiDBLite consensus disorder prediction 175 195 - -
Cmetu04g1399 279 ProSitePatterns GATA-type zinc finger domain. 202 227 IPR000679 GO:0006355|GO:0043565
Cmetu04g1399 279 Gene3D - 193 273 IPR013088 GO:0006355|GO:0008270
Cmetu04g1399 279 SMART GATA_3 196 250 IPR000679 GO:0006355|GO:0043565
Cmetu04g1399 279 MobiDBLite consensus disorder prediction 47 95 - -
Cmetu04g1399 279 ProSiteProfiles GATA-type zinc finger domain profile. 196 232 IPR000679 GO:0006355|GO:0043565
Cmetu04g1399 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 259 - -
Cmetu04g1399 279 Pfam GATA zinc finger 202 235 IPR000679 GO:0006355|GO:0043565
Cmetu04g1399 279 PANTHER GATA TRANSCRIPTION FACTOR 33 270 - -
Cmetu04g1399 279 MobiDBLite consensus disorder prediction 175 191 - -
Cmetu04g1399 279 MobiDBLite consensus disorder prediction 67 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1399 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1399 Cmetu-Chr4:3899744 Cmetu05g1286 Cmetu-Chr5:17418118 2.40E-30 dispersed
Cmetu11g0280 Cmetu-Chr11:27929035 Cmetu04g1399 Cmetu-Chr4:3899744 2.10E-33 wgd
Cmetu04g1399 Cmetu-Chr4:3899744 Cmetu07g0573 Cmetu-Chr7:4305823 1.10E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0192 . 108 359 C2C2-Gata Transcription Factor Family AT5G25830 58.5 1.8e-69 260.0
Cmetu07g0573 . 15 297 C2C2-Gata Transcription Factor Family AT5G66320 52.2 8.1e-65 244.6
Cmetu04g1399 . 104 267 C2C2-Gata Transcription Factor Family AT4G36240 54.2 1.5e-41 166.8
Cmetu03g0192 . 110 359 C2C2-Gata Transcription Factor Family AT4G32890 50.5 2.3e-58 223.0
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 1.9e-137 486.5
Cmetu04g3254 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.9 1.9e-134 476.5
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.5 1.4e-118 423.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7753 PF00320 GATA 1.10E-16 CL0167 Cmetu TF