Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1430 ATGGAGGTTTTACAGGCCCTTGATTCTCAGGTTCTCATTGGTTTAGCAGCGGCCTTAATTGCCATTGTTGTTGGTGCAGTTTTCCTTTTTTCCTCCAGAAAACCCGCATCCAAAGCTTGCTTGAATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTGAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGACTGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGGAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGATTCGGATGTTGGATATTTTGAACTAGTCATAAAGATGTACCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGTATCGGGGACTCTCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTAGTGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTTCTCGCGCTATATTAGAGAACCCAGAGGACAAGACAAAGGTTCACCTTATTTACGCCAATGTTACTCTAGAAGATATTCTGTTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAGATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTATCTAAGGAAATGATTAAAGCACATTGCCCTGCGCCAGCTGCTGACATTAAGATTCTACGATGCGGTCCGCCACCGATGAACAAGGCCATGGGCGAGCACCTTGACGCTCTTGGATATTCACCTGAAATGCAGTTTCAATTCTAA 843 44.48 MEVLQALDSQVLIGLAAALIAIVVGAVFLFSSRKPASKACLNPEKFKEFKLVKRTKLSHNVAKFTFILPKTDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDSLAVKGPKGRFKYQPGQVSAFGMLAGGSGITPMYQVSRAILENPEDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGEHLDALGYSPEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7136236 7140639 - PI0023252.1 Cmetu04g1430 353874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1430 280 Gene3D Translation factors 36 138 - -
Cmetu04g1430 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 276 IPR039261 -
Cmetu04g1430 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491
Cmetu04g1430 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
Cmetu04g1430 280 SUPERFAMILY Riboflavin synthase domain-like 40 149 IPR017938 -
Cmetu04g1430 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
Cmetu04g1430 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cmetu04g1430 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cmetu04g1430 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cmetu04g1430 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cmetu04g1430 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cmetu04g1430 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cmetu04g1430 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Cmetu04g1430 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 36 280 IPR001834 GO:0016491
Cmetu04g1430 280 Gene3D - 139 280 IPR039261 -
Cmetu04g1430 280 CDD cyt_b5_reduct_like 49 280 - -
Cmetu04g1430 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491
Cmetu04g1430 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491
Cmetu04g1430 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491
Cmetu04g1430 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1430 K00326 - - csv:101212931 540.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1430 Cmetu-Chr4:7136236 Cmetu08g0889 Cmetu-Chr8:7220773 4.10E-131 dispersed
Cmetu04g1430 Cmetu-Chr4:7136236 Cmetu07g0308 Cmetu-Chr7:19365419 1.80E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86