Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1441 ATGGTTATGGCTGCCGATTCCCAATTCCATGTTCTTGCGGTCGATGATAGCCTCATAGATAGAAAGCTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTTTGATTCAAGAACATCAACCTACAAACTTCAAATCGTCTTCTAATTCTTCTTTTTCCTCCTCTAACAATCATCATCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTACTCAAGAAAGTTAAGGAATCAACATCGCTAAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAACAGATGTTTAGAAGAAGGCGCGGAAGAGTTTTTTCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAATTGAAGGAGGATCAAAATCAAGAAGAAGAAGAAGAAGAAGAAGAATCAAGAACAGAGACCGAATTGAAATCGGTACAAGAAGAAGAAGAGGAGATTGAGTTTGAGATGAAGAGTAAGAAGAGAAAGGGAGGTATGGAAGAAGAAGAGGAAGAAGAAGAAAAAGAAGAAGAAGGTTTGGAGGAGGAGATAAGAAGAAGAAGAAGAAGGTATAACAACAATGGCGTTGCGACGGCAATTTGA 705 39.86 MVMAADSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQPTNFKSSSNSSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLKEDQNQEEEEEEEESRTETELKSVQEEEEEIEFEMKSKKRKGGMEEEEEEEEKEEEGLEEEIRRRRRRYNNNGVATAI 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7713680 7715513 + PI0014675.1 Cmetu04g1441 353885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1441 234 SMART REC_2 9 147 IPR001789 GO:0000160
Cmetu04g1441 234 MobiDBLite consensus disorder prediction 153 234 - -
Cmetu04g1441 234 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 205 IPR045279 GO:0009736
Cmetu04g1441 234 MobiDBLite consensus disorder prediction 173 202 - -
Cmetu04g1441 234 ProSiteProfiles Response regulatory domain profile. 10 152 IPR001789 GO:0000160
Cmetu04g1441 234 Coils Coil 153 224 - -
Cmetu04g1441 234 Pfam Response regulator receiver domain 11 141 IPR001789 GO:0000160
Cmetu04g1441 234 SUPERFAMILY CheY-like 8 156 IPR011006 -
Cmetu04g1441 234 CDD REC_typeA_ARR 11 147 - -
Cmetu04g1441 234 Gene3D - 10 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1441 K14492 - - csv:101220810 326.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g2252 Cmetu-Chr3:13661054 Cmetu04g1441 Cmetu-Chr4:7713680 5.90E-43 dispersed
Cmetu04g1441 Cmetu-Chr4:7713680 Cmetu09g0403 Cmetu-Chr9:11039384 3.40E-54 dispersed
Cmetu04g1441 Cmetu-Chr4:7713680 Cmetu08g0497 Cmetu-Chr8:5227971 2.70E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1179 . . . Bda03g00627 Bpe04g01386 . Bma04g01468 Bma10g00231 . . Cma03g00130 Cma07g01364 Car03g00131 Car07g01312 Sed14g0018 . . Bhi03g02471 Tan03g0466 Cmetu08g0497 . Hepe04g0485 . . Cla04g00444 Cam04g0440 Cec04g0555 Cco04g0576 Clacu04g0453 Cmu04g0488 Cre04g0540 Cone3ag0023 . Cone13ag0617 Cone19ag0548 Lsi01g01790 Csa04g01951 . Cme04g02093 . . . . Bpe04g00591 . . . Sed02g0819 Cmo03g00167 Cmo07g01403 . . . Car14g00475 Cpe03g00456 . Bhi11g02832 Tan08g1252 Cmetu04g1441 . Hepe05g0710 . . Cla10g01535 Cam10g1583 Cec10g1628 Cco10g1598 Clacu10g1595 Cmu10g2355 Cre10g1736 Lsi03g01597 Csa03g03727 . Cme08g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g1880 . 52 346 Response Regulator Gene Family AT3G16857 53.6 1.1e-59 228.4
Cmetu03g0215 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cmetu02g1717 . 18 383 Response Regulator Gene Family AT4G31920 54.0 1.8e-90 330.5
Cmetu07g1880 . 1 413 Response Regulator Gene Family AT4G31920 52.2 3.8e-88 322.8
Cmetu05g0860 . 13 340 Response Regulator Gene Family AT4G31920 51.5 7.2e-79 292.0
Cmetu06g0551 . 16 270 Response Regulator Gene Family AT4G31920 53.1 1.2e-68 258.1
Cmetu11g1360 . 31 268 Response Regulator Gene Family AT4G31920 51.6 1.2e-62 238.0
Cmetu03g0215 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.7e-62 236.1
Cmetu06g0551 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.9e-39 159.1
Cmetu02g1717 . 99 269 Response Regulator Gene Family AT1G67710 50.3 1.2e-36 151.4
Cmetu05g0860 . 17 362 Response Regulator Gene Family AT2G25180 54.5 1.2e-82 304.7
Cmetu06g0551 . 18 290 Response Regulator Gene Family AT2G25180 54.7 3.3e-77 286.6
Cmetu03g0215 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.6e-69 258.5
Cmetu11g1360 . 76 309 Response Regulator Gene Family AT2G01760 51.0 2.3e-53 206.5
Cmetu02g1717 . 79 303 Response Regulator Gene Family AT2G01760 52.6 6.9e-50 194.9
Cmetu03g0215 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.8e-48 189.1
Cmetu03g0215 . 9 258 Response Regulator Gene Family AT5G58080 50.6 7.1e-62 235.7
Cmetu06g0551 . 12 241 Response Regulator Gene Family AT4G16110 65.3 3.3e-78 290.0
Cmetu11g1360 . 30 239 Response Regulator Gene Family AT4G16110 60.3 1.2e-67 255.0
Cmetu07g1880 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.7e-61 233.4
Cmetu03g0215 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cmetu02g1717 . 17 249 Response Regulator Gene Family AT4G16110 53.0 5.5e-57 219.5
Cmetu05g0860 . 12 266 Response Regulator Gene Family AT4G16110 52.0 1.5e-51 201.4
Cmetu02g1807 . 18 186 Response Regulator Gene Family AT3G48100 66.3 5.6e-52 201.1
Cmetu10g0771 . 29 162 Response Regulator Gene Family AT3G48100 72.4 6.2e-51 197.6
Cmetu09g0403 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.7e-40 162.9
Cmetu08g0497 . 17 156 Response Regulator Gene Family AT3G48100 58.6 1.4e-39 159.8
Cmetu04g1441 . 3 155 Response Regulator Gene Family AT3G48100 52.9 2.4e-39 159.1
Cmetu10g0872 . 12 169 Response Regulator Gene Family AT3G48100 55.1 3.2e-39 158.7
Cmetu10g0771 . 1 175 Response Regulator Gene Family AT1G59940 65.4 3.9e-56 215.7
Cmetu02g1807 . 9 158 Response Regulator Gene Family AT1G59940 62.3 2.1e-46 183.3
Cmetu10g0872 . 7 157 Response Regulator Gene Family AT1G59940 58.3 1.3e-40 164.1
Cmetu09g0403 . 5 150 Response Regulator Gene Family AT1G59940 61.0 1.3e-40 164.1
Cmetu04g1441 . 8 153 Response Regulator Gene Family AT1G59940 57.5 3.0e-40 162.9
Cmetu08g0497 . 17 154 Response Regulator Gene Family AT1G59940 58.7 5.6e-39 158.7
Cmetu10g0771 . 16 185 Response Regulator Gene Family AT1G10470 67.1 4.2e-55 211.8
Cmetu02g1807 . 29 191 Response Regulator Gene Family AT1G10470 60.8 1.8e-45 179.9
Cmetu04g1441 . 10 153 Response Regulator Gene Family AT1G10470 58.3 5.0e-40 161.8
Cmetu09g0403 . 5 155 Response Regulator Gene Family AT1G10470 57.7 8.6e-40 161.0
Cmetu10g0872 . 7 157 Response Regulator Gene Family AT1G10470 56.3 1.2e-38 157.1
Cmetu08g0497 . 17 154 Response Regulator Gene Family AT1G10470 60.1 1.6e-38 156.8
Cmetu02g1807 . 18 186 Response Regulator Gene Family AT3G48100 66.3 5.6e-52 201.1
Cmetu10g0771 . 29 162 Response Regulator Gene Family AT3G48100 72.4 6.2e-51 197.6
Cmetu09g0403 . 11 149 Response Regulator Gene Family AT3G48100 60.4 1.7e-40 162.9
Cmetu08g0497 . 17 156 Response Regulator Gene Family AT3G48100 58.6 1.4e-39 159.8
Cmetu04g1441 . 3 155 Response Regulator Gene Family AT3G48100 52.9 2.4e-39 159.1
Cmetu10g0872 . 12 169 Response Regulator Gene Family AT3G48100 55.1 3.2e-39 158.7
Cmetu02g1807 . 30 163 Response Regulator Gene Family AT5G62920 78.4 4.3e-52 201.4
Cmetu10g0771 . 11 175 Response Regulator Gene Family AT5G62920 64.2 1.2e-49 193.4
Cmetu09g0403 . 9 149 Response Regulator Gene Family AT5G62920 59.6 4.5e-41 164.9
Cmetu04g1441 . 10 155 Response Regulator Gene Family AT5G62920 55.5 1.9e-39 159.5
Cmetu10g0872 . 2 172 Response Regulator Gene Family AT5G62920 51.2 2.7e-38 155.6
Cmetu02g1807 . 29 162 Response Regulator Gene Family AT1G19050 75.4 2.2e-49 192.6
Cmetu10g0771 . 28 185 Response Regulator Gene Family AT1G19050 60.4 1.3e-44 176.8
Cmetu04g1441 . 8 158 Response Regulator Gene Family AT1G19050 53.6 1.4e-38 156.8
Cmetu10g0872 . 9 154 Response Regulator Gene Family AT1G19050 55.5 5.2e-38 154.8
Cmetu08g0497 . 15 156 Response Regulator Gene Family AT1G19050 55.6 5.2e-38 154.8
Cmetu09g0403 . 3 152 Response Regulator Gene Family AT1G19050 52.7 3.3e-37 152.1
Cmetu08g0497 . 8 260 Response Regulator Gene Family AT2G41310 53.7 9.9e-59 223.8
Cmetu04g1441 . 1 159 Response Regulator Gene Family AT2G41310 72.3 4.2e-57 218.4
Cmetu09g0403 . 1 151 Response Regulator Gene Family AT2G41310 65.6 5.4e-49 191.4
Cmetu10g0872 . 3 150 Response Regulator Gene Family AT2G41310 67.6 7.8e-48 187.6
Cmetu10g0771 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.2e-41 165.6
Cmetu02g1807 . 28 159 Response Regulator Gene Family AT2G41310 61.9 3.5e-40 162.2
Cmetu08g0497 . 8 260 Response Regulator Gene Family AT3G57040 53.9 8.1e-64 240.7
Cmetu04g1441 . 1 157 Response Regulator Gene Family AT3G57040 75.8 5.1e-58 221.5
Cmetu09g0403 . 1 154 Response Regulator Gene Family AT3G57040 66.2 7.9e-51 197.6
Cmetu10g0872 . 8 150 Response Regulator Gene Family AT3G57040 70.6 2.5e-49 192.6
Cmetu10g0771 . 25 158 Response Regulator Gene Family AT3G57040 59.4 3.5e-43 172.2
Cmetu02g1807 . 28 159 Response Regulator Gene Family AT3G57040 62.4 1.3e-40 163.7
Cmetu02g1807 . 24 179 Response Regulator Gene Family AT1G74890 69.4 6.9e-51 197.6
Cmetu10g0771 . 25 187 Response Regulator Gene Family AT1G74890 61.8 2.7e-47 185.7
Cmetu10g0872 . 2 160 Response Regulator Gene Family AT1G74890 57.9 4.5e-42 168.3
Cmetu09g0403 . 7 144 Response Regulator Gene Family AT1G74890 58.7 6.1e-39 157.9
Cmetu08g0497 . 15 175 Response Regulator Gene Family AT1G74890 52.7 8.0e-39 157.5
Cmetu04g1441 . 8 153 Response Regulator Gene Family AT1G74890 54.8 1.0e-38 157.1
Cmetu10g0771 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.7e-39 159.5
Cmetu04g1441 . 6 155 Response Regulator Gene Family AT2G40670 55.0 1.7e-39 159.5
Cmetu08g0497 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.8e-37 150.6
Cmetu02g1807 . 29 160 Response Regulator Gene Family AT2G40670 58.5 1.0e-36 150.2
Cmetu10g0771 . 26 159 Response Regulator Gene Family AT3G56380 54.8 3.2e-40 161.8
Cmetu04g1441 . 6 155 Response Regulator Gene Family AT3G56380 55.0 1.6e-39 159.5
Cmetu02g1807 . 24 160 Response Regulator Gene Family AT3G56380 58.7 3.5e-39 158.3
Cmetu09g0403 . 11 152 Response Regulator Gene Family AT3G56380 57.3 5.0e-38 154.5
Cmetu10g0872 . 2 149 Response Regulator Gene Family AT3G56380 53.7 5.6e-37 151.0
Cmetu07g1880 . 52 346 Response Regulator Gene Family AT3G16857 53.6 1.1e-59 228.4
Cmetu03g0215 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cmetu06g0551 . 12 241 Response Regulator Gene Family AT4G16110 65.3 3.3e-78 290.0
Cmetu11g1360 . 30 239 Response Regulator Gene Family AT4G16110 60.3 1.2e-67 255.0
Cmetu07g1880 . 12 233 Response Regulator Gene Family AT4G16110 71.0 3.7e-61 233.4
Cmetu03g0215 . 10 235 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cmetu02g1717 . 17 249 Response Regulator Gene Family AT4G16110 53.0 5.5e-57 219.5
Cmetu05g0860 . 12 266 Response Regulator Gene Family AT4G16110 52.0 1.5e-51 201.4
Cmetu02g1717 . 18 383 Response Regulator Gene Family AT4G31920 54.0 1.8e-90 330.5
Cmetu07g1880 . 1 413 Response Regulator Gene Family AT4G31920 52.2 3.8e-88 322.8
Cmetu05g0860 . 13 340 Response Regulator Gene Family AT4G31920 51.5 7.2e-79 292.0
Cmetu06g0551 . 16 270 Response Regulator Gene Family AT4G31920 53.1 1.2e-68 258.1
Cmetu11g1360 . 31 268 Response Regulator Gene Family AT4G31920 51.6 1.2e-62 238.0
Cmetu03g0215 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.7e-62 236.1
Cmetu06g0551 . 99 261 Response Regulator Gene Family AT1G67710 53.3 5.9e-39 159.1
Cmetu02g1717 . 99 269 Response Regulator Gene Family AT1G67710 50.3 1.2e-36 151.4
Cmetu05g0860 . 17 362 Response Regulator Gene Family AT2G25180 54.5 1.2e-82 304.7
Cmetu06g0551 . 18 290 Response Regulator Gene Family AT2G25180 54.7 3.3e-77 286.6
Cmetu03g0215 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.6e-69 258.5
Cmetu11g1360 . 76 309 Response Regulator Gene Family AT2G01760 51.0 2.3e-53 206.5
Cmetu02g1717 . 79 303 Response Regulator Gene Family AT2G01760 52.6 6.9e-50 194.9
Cmetu03g0215 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.8e-48 189.1
Cmetu03g0215 . 9 258 Response Regulator Gene Family AT5G58080 50.6 7.1e-62 235.7
Cmetu12g2014 . 6 555 Response Regulator Gene Family AT5G61380 50.9 1.8e-142 503.4
Cmetu08g0676 . 38 206 Response Regulator Gene Family AT5G60100 68.6 2.4e-55 213.4
Cmetu09g1218 . 50 187 Response Regulator Gene Family AT5G60100 61.6 2.3e-45 180.3
Cmetu08g0676 . 67 206 Response Regulator Gene Family AT5G24470 55.7 4.3e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7755 PF00072 Response_reg 4.90E-17 CL0304 Cmetu TR