Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1455 ATGTCGAAGCTCTTCGCCTTTTCCGGTAGTGAAGATTTTTGCCCTGGAGGGTCAATATACCCAAATCCCAAGGACTCAAGTTTATTCTTGTCCCTTCCTCACCACGTCGATGTCTATTTTCCTCCTCGAAAGAGGTCTCGCATCACTGCTCCATTTGTGTTTGGTGGAGAAGAAGTTGAATCAAAAGCAAATGTTTCTATCGAGATTCTTCCGGATGAGTGCCTGTTTGAGATTTTCAGACGATTGTCTGGTGGCAAAGAAAGGAGTGCCTGCGCAACCGTTTCTAAACGATGGCTTATGCTTTTGAGCAATATATATTCCCACGAGTTGAAATCTGAGGATGAGGTGGCCTCAAAGGAGGTTGAAGACATTGAAATTGAGAGTGATGGATATCTGTCTAGGAGTTTGGAAGGCAAGCAGGCGACAGATCTCAGACTTGCTGCCATTTCAGTTGGAACTGCAAGTCGAGGGGGTTTAGGTAAGCTTGTGATTCGGGGAAACAATCATGTCAGTAAGGTTACAGACCTCGGACTTAAGGCAATTGCTCGTGGGTGTCAATCCCTGAGGGCTCTTTCTTTGTGGAATCTTTCCTCTATTAGAGATGAAGGTCTTTGTGAGATTGCCAAGGCGTCTCACCAGTTGGAGAAGCTTGATCTCTGTCGTTGCCCTGCTGTATCTGACAAGGCTTTGGTTGAAATAGCAAGGAACTGCCCAAAGTTGACTGATATTACAATTGAATCTTGTGCGAAAATTGGAAATGAAAGTCTGCGGGCTATTGGGCAGTTCTGCCCCAAGCTGAAGTCTATTGTGATTAAAGATTGCCCACTCGTTGGAGATCAGGGAATTGCTAGTTTGTTGTCTTTGAACACTTGTGCCTTGAATAAGGTGAAGCTTCAGGCGTTGAACGTTTCCGATGTGTCCCTTGCTGTTATTGGGCACTATGGCAAGGCAGTTACTGACCTTGTCCTTACCGATCTTAAGAATGTTAGTGAAAAAGGGTTCTGGGTCATGGGTAATGGTCATGGACTACAAAAATTGAAGTCATTCACAATTTCCTCCTGCAATGGAGTGACAGACATGGGCCTTGAATCTGTTGGAAAGGGTAGTCCAAATTTAAAGCATTTCTGTCTAAGGAAGTCTGCAAGGTCGCTAGAATGCTTGCAATTGGAAGAGTGCCACAGGATCACTCAGTTTGGATTCTTTGGTGTCGTTTTGAACTGCAGTGCAACTTTGAAGGCTCTTTCTCTCATAAGCTGCTTGGGAATTAAGGACATTAACTCAGAATTTCCTATCCCAGCCTCTAGCGGATCCTTACGGTCGTTGACCATCCGCAACTGCCATGGTTTTGGCAACAGAAACCTTGCTTTACTGGGCAAGCTATGCCCCCAGTTGCAAAATGTGGATTTTAGTGGACTTGTTGGAATTGATGATTGTGGATTTCTAGCTTGGCTCCAAAACTGTCAGTCGGGTTTAGTGAAGATCAATGTTAATGGTTGTGTCAACCTGACCGACAAGGTTGTTTCATCCATAATCGAGCACCATGGTTGGTCCCTTAAAATGCTTAATCTCGATGGTTGTAAGAAGATCACTGATGCTAGCATGACTTCCATTGCAAACAACTGCCCATTACTCAGTGATCTTGATGTCTCAAAATGCTCGATCACAGATTCAGGAATTGCAGCTCTAGCTCATGCCAAGCGACTGAATCTGCAGATCTTTTCGATTTCTGGTTGCTCATTCGTGTCAGACAAAAGCTTGGCAGACTTGTTAAACTTGGGTGAGACTCTTGTGGGTCTCAACATCCAGCATTGTAATGCTATCAGCAGTAGCACTGTTGATCTGCTTGTGGAGCAGCTCTGGAGATGTGACATTCTTTCATAA 1881 44.55 MSKLFAFSGSEDFCPGGSIYPNPKDSSLFLSLPHHVDVYFPPRKRSRITAPFVFGGEEVESKANVSIEILPDECLFEIFRRLSGGKERSACATVSKRWLMLLSNIYSHELKSEDEVASKEVEDIEIESDGYLSRSLEGKQATDLRLAAISVGTASRGGLGKLVIRGNNHVSKVTDLGLKAIARGCQSLRALSLWNLSSIRDEGLCEIAKASHQLEKLDLCRCPAVSDKALVEIARNCPKLTDITIESCAKIGNESLRAIGQFCPKLKSIVIKDCPLVGDQGIASLLSLNTCALNKVKLQALNVSDVSLAVIGHYGKAVTDLVLTDLKNVSEKGFWVMGNGHGLQKLKSFTISSCNGVTDMGLESVGKGSPNLKHFCLRKSARSLECLQLEECHRITQFGFFGVVLNCSATLKALSLISCLGIKDINSEFPIPASSGSLRSLTIRNCHGFGNRNLALLGKLCPQLQNVDFSGLVGIDDCGFLAWLQNCQSGLVKINVNGCVNLTDKVVSSIIEHHGWSLKMLNLDGCKKITDASMTSIANNCPLLSDLDVSKCSITDSGIAALAHAKRLNLQIFSISGCSFVSDKSLADLLNLGETLVGLNIQHCNAISSSTVDLLVEQLWRCDILS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30118306 30120860 - PI0027335.1 Cmetu04g1455 353899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1455 626 CDD F-box_AtTIR1-like 67 101 - -
Cmetu04g1455 626 SMART fbox_2 70 111 IPR001810 GO:0005515
Cmetu04g1455 626 Gene3D Ribonuclease Inhibitor 134 249 IPR032675 -
Cmetu04g1455 626 Gene3D Ribonuclease Inhibitor 250 427 IPR032675 -
Cmetu04g1455 626 Pfam F-box-like 69 102 IPR001810 GO:0005515
Cmetu04g1455 626 Gene3D Ribonuclease Inhibitor 429 626 IPR032675 -
Cmetu04g1455 626 SMART LRR_CC_2 461 486 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 488 513 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 541 565 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 435 460 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 185 210 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 237 262 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 211 236 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 515 540 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 343 368 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 567 592 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 381 406 IPR006553 -
Cmetu04g1455 626 SMART LRR_CC_2 263 288 IPR006553 -
Cmetu04g1455 626 Pfam Leucine Rich repeat 541 563 IPR001611 GO:0005515
Cmetu04g1455 626 SUPERFAMILY F-box domain 61 104 IPR036047 GO:0005515
Cmetu04g1455 626 Gene3D - 60 108 - -
Cmetu04g1455 626 PANTHER UNCHARACTERIZED 517 609 - -
Cmetu04g1455 626 SUPERFAMILY RNI-like 171 398 - -
Cmetu04g1455 626 SUPERFAMILY RNI-like 382 612 - -
Cmetu04g1455 626 FunFam EIN3-binding F-box protein 1 487 624 - -
Cmetu04g1455 626 FunFam EIN3-binding F-box protein 1 131 249 - -
Cmetu04g1455 626 FunFam EIN3-binding F-box protein 1 250 426 - -
Cmetu04g1455 626 FunFam EIN3-binding F-box protein 1 66 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1455 K14515 - - csv:101207154 1193.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1019 Cmetu-Chr2:19109943 Cmetu04g1455 Cmetu-Chr4:30118306 2.00E-101 dispersed
Cmetu03g1877 Cmetu-Chr3:4343161 Cmetu04g1455 Cmetu-Chr4:30118306 8.00E-146 wgd
Cmetu04g1455 Cmetu-Chr4:30118306 Cmetu05g0929 Cmetu-Chr5:1293068 8.00E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40