Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1481 ATGGAGTCTCGTTTTTCCCTCTTATTTCTTCTACTCATCTCCCTTGGAATTGTTTGTAGTTATGCTGCCGATTATGATATTGATATCTCGCCTGAACAGTATTGGAATTCTGCCTTGCCAAACACTCCCATGCCCAAAGCTATTAAAAATCTCATTAGCAACGACTTTCTAGAAGGAAAAAGCACTTCAATGAGTGTTGGTAAAGGGGGCGTAAATGTCAACACCGGAAAAGGCAAGCCTAGAGGCACCTCCGTTAACGTTGGAAAAGGCGGAGTTAACGTCAACACTCCAAAACCAAAACAAGGAGGCACTTCTGTTAACGTCGGTAAAGGAGGCGTTAACGTTCACGCCGGTCATAAAGGTAAACCGGTTTATGTTGGAGTTAAACCGGGCTACAGTCCCTTTAGTTATATATACGCAGCCACAGAAACCCAAGTTCATGATGACCCAAATAGAGCCCTTTTCTTTCTTGAAAAAGATCTCCACCCTAATTCCAAATTCACCCTTCATTTCTCTAAACAAACAACCACCACCACTAATTTCTTGCCACGTCATGTTGCCAAATCAATCCCTTTTTCTTCCCAAAAACTCCCCCAAATCCTCACTCACTTCTCTATTCCACCCACAAGTCTCGAGGCCGAGTCGATTCGAAACACAATCAACCAATGCGAAGCACCTGGTATTGTCGGTGAAGATAAGTTCTGTGCCACGTCATTAGAGTCCATGGTGGATTTTAGTACTTCTAAGTTGGGAAAGAAGGTGACGTTGGTCTCGACAGAAGTCGAGAAAGATACAGGTTTGCAATCGTTTACTGTTGTAAATTTGACGAAGAAATCATCAGGAACAGACTCTGCAGTTGTGTGCCATAAGTTGAGCTATCCATATGCAGTGTTTTATTGTCATTACACACAACACACACGTGTTTATAAGGTTCGTTTGTCGAGTGATGGTAATGGTAACGGGACTAATGGTAATGGTAAAGGTAATGGGAGTAATGGTAAAGTTAGTTTGACTAATGATAATGGTAATGGGACTAGTGGTAACGTGGTACCCAACGTGGTAGCCGTGTGTCACACTGACACGTCAGCTTGGAATCCAAAGCATTTGGCTTTTCAAGTGTTGAAGGTGAAGCCAGGGACAGTTCCAGTTTGCCATTTCCTTCCACAAGACCATGTTGTATGGGTTTCAAAATACTAG 1197 42.86 MESRFSLLFLLLISLGIVCSYAADYDIDISPEQYWNSALPNTPMPKAIKNLISNDFLEGKSTSMSVGKGGVNVNTGKGKPRGTSVNVGKGGVNVNTPKPKQGGTSVNVGKGGVNVHAGHKGKPVYVGVKPGYSPFSYIYAATETQVHDDPNRALFFLEKDLHPNSKFTLHFSKQTTTTTNFLPRHVAKSIPFSSQKLPQILTHFSIPPTSLEAESIRNTINQCEAPGIVGEDKFCATSLESMVDFSTSKLGKKVTLVSTEVEKDTGLQSFTVVNLTKKSSGTDSAVVCHKLSYPYAVFYCHYTQHTRVYKVRLSSDGNGNGTNGNGKGNGSNGKVSLTNDNGNGTSGNVVPNVVAVCHTDTSAWNPKHLAFQVLKVKPGTVPVCHFLPQDHVVWVSKY 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30970734 30973238 - PI0001951.1 Cmetu04g1481 353925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1481 398 MobiDBLite consensus disorder prediction 68 113 - -
Cmetu04g1481 398 SMART BURP_2 153 397 IPR004873 -
Cmetu04g1481 398 MobiDBLite consensus disorder prediction 319 344 - -
Cmetu04g1481 398 ProSiteProfiles BURP domain profile. 155 397 IPR004873 -
Cmetu04g1481 398 Pfam BURP domain 334 395 IPR004873 -
Cmetu04g1481 398 Pfam BURP domain 154 318 IPR004873 -
Cmetu04g1481 398 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 334 396 IPR044816 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1481 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1481 Cmetu-Chr4:30970734 Cmetu03g0294 Cmetu-Chr3:36054 1.80E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1616 . . . . . . . . Bhi09g02410 Tan01g3770 Cmetu04g1481 . Hepe01g2112 Mch11g0650 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010252 2 1 0 2 1 1 1 0 1 0 1 1 0 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 4 31