Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1511 ATGTTAGCAAACCCTTGCGGCCTCCATTTCCGACCATGCTATTTCCACACGTCTGAATTCTCTCATTTTGGAACATCCAAAATCTGTTTGTCTTCTTATTGCCCTCGCTTCCATGGGTCCACGAAATCCAAGTTCTCTTCTCTTTCGCTTCTTCGAAGTAAGAAAAACGGTAAGAGATTGGTCACCAAGGCTCTTTCGGAGTCTTCAGTACCTGACACGGTTGCGGCCAGCGATGGGGCACCCGGTTCTTTGCGGCCTTACTCTGTCAAAATTCCTGTTGGGGATAGACATATTTTGGTTGAGACGGGCCATATTGGGAGGCAAGCTAGTAGTGCTGTTACAGTAACTGATGGAGAAACTATTGTTTATACAACTGTTTGTTTGGCTGATACACCAAGTGAACCTTCAGATTTCTTTCCTCTTTCTGTTAATTATCAAGAGCGTTTTTCTGCAGCAGGTCGGACTAGTGGAGGATTCTTCAAACGAGAAGGAAGAGCAAGAGATCATGAGGTTCTCATTTGTAGATTGATTGATAGGCCCATACGTCCAACTATGCTCAAAGGTTTTTACCATGAAACCCAGATATTATCTTGGGTTTTGAGTTATGATGGTCTGCACACCCCTGATTGTTTGGCAATTACAGCAGCTGGAATAGCAGTTGCGCTCTCAGAAGTTCCTAATTCAAAAGCAGTTGCTGGAGTTCGAATTGGTCTTGTTGGCGACAAGTTTATTGTTAACCCAACTACTAAAGAGATGGAAGACTCTGAGCTTGATTTAGTACTTGCTGGCACAGATAGTGCAATATTGATGATAGAGGGGTATTGTAATTTTCTATCAGAAGAGATGTTGCTCCAAGCTGTAGAAATTGGGCAGAATGCGGTAACAGCAATTTGCAAAGAGGTGGATTCTTTAGTAAGAGAGCGTGGGAAACCAAAAATGCTCGATGCCATTAGGCTTCCTCCTCCTCAGCTATATAAACATGTTGAAGAAATTGCTGGAAATGAGTTAGAAAAAGTTCTGCAAATTAGAAACAAAATTCCCCGACGAAAGGCTCTCTCCTCATTAGAAGAAAAAGTTATTACCATATTGACAGAAGAAGGTTACGTCAGTTTAGATACCACTTCAGGGGGTCTCGAACCCATACCTGATTTGGTGGAGGATGAAGATGAGGATGATGTCGTGGTGGATGGTGAAGTTGATGAAGGTGATGTTCATATTAAACCAACTACACGCAAGCCTATTCCAACACTCTTTTCTGAGGTGGATGTAAAGTTAGTATTTAAAGAAGTGACATCCAAGTTTCTCCGGAGACGTATTGTAGAGGGTGGAAGAAGAAGTGATGGGAGGACGCCGGTTGAGATACGCCCAATTAACTCAAAATGTGGGTTACTTCCTCGGGCTCATGGCAGCACACTTTTCACTCGTGGTGAAACTCAGTCACTTGCTGTGGTTACGCTGGGGGATAGGCAAATGGCACAAAGAGTGGACAATCTTGTTGATGTAGATGAGTTGAAAAGGTTCTACCTTCAGTACTCATTTCCCCCATCGTGTGTTGGAGAAGCTGGACGTATTGGTGCACCTAGTCGAAGGGAAATTGGTCACGGTATGCTTGCGGAGAGAGCGCTGGAACCATCTTTACCTTCTGAAGATGATTTTCCATACACCATTCGTGTTGAGAGTACAATCACTGAAAGCAATGGCTCCTCAAGCATGGCATCCGTTTGTGGGGGTTCATTGGCTTTGCAAGATGCTGGAGTTCCAATTAAGTGTCCAATTGCTGGTATAGCAATGGGGTTGGTTCTTGATACAAAAGAATTTGGGGGCGATGGAACTCCACTTATTCTGTCTGACATAACAGGATCTGAGGATGCTTCCGGAGATATGGATTTCAAGTTAGCTGGTAACGAAATGGGCATAACAGCATTTCAGATGGACATAAAGGTGGGAGGCATTACTATACCCATTATGAGAGAGGCACTCCTGCAAGCAAAGGATGGGCGTAAGCATATTCTTGCTGAAATGTTGAACTCTTCTCCTCCTCCTTCAAAAAGGCTTTCACCGTATGCTCCACTGATTCACGTCATGAAGGTTCAACCTGAAAAAATAAATCTAATCATTGGTACTGGTGGAAAAAAGGTGAAGAGCATTATAGAGGAAACAGGAGTTGAGGCTATCGACACTAGAGATGATGGGATAGTTAAAATTACTGCAAAGGATTTGACAAGCTTGGAAAAATCTAAAGCTATTATTAGCAATCTGACAATGGTTCCAGCTATTGGTGATATCTATAGGAACTGTGAGATCAAGACGATTGCTGCTTATGGTGTATTTGTTGAGATAGCACCTGGACGAGAGGGACTTTGCCATATTAGTGAGTTGAGCTCAGATTGGTTGGCAAAGGCAGAAGATGCTTTTAAAGTTGGAGACAAAATCGATGTCAAACTCATTGAGGTAAATGAAAAGGGCCAGCTCCGCCTTAGCCGTCGTGCATTGCTTCCAGATGCTGATCAGGATTCCAATTCGAAGGAGAATACAGGCAACCCCTCTAGAAACAAGACTGCAATGCAAAAGGGCACTGATAAAGGTACATCTAAGAAAGCTGGTAAGGAGAACATAGAACAAACTAACGTGCAGAAAGGTGGTGCTGCACCAATGGGTGGCTCATTGGAAGATGCTGCGAAACTGCAGAAGAAATTTATACGGAAAGGAGTAACCGCTACCAAAGAAAGACCTATAAGCAAAGAACAGACGAAAAGCACTAGCAGTTGA 2769 43.34 MLANPCGLHFRPCYFHTSEFSHFGTSKICLSSYCPRFHGSTKSKFSSLSLLRSKKNGKRLVTKALSESSVPDTVAASDGAPGSLRPYSVKIPVGDRHILVETGHIGRQASSAVTVTDGETIVYTTVCLADTPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRARDHEVLICRLIDRPIRPTMLKGFYHETQILSWVLSYDGLHTPDCLAITAAGIAVALSEVPNSKAVAGVRIGLVGDKFIVNPTTKEMEDSELDLVLAGTDSAILMIEGYCNFLSEEMLLQAVEIGQNAVTAICKEVDSLVRERGKPKMLDAIRLPPPQLYKHVEEIAGNELEKVLQIRNKIPRRKALSSLEEKVITILTEEGYVSLDTTSGGLEPIPDLVEDEDEDDVVVDGEVDEGDVHIKPTTRKPIPTLFSEVDVKLVFKEVTSKFLRRRIVEGGRRSDGRTPVEIRPINSKCGLLPRAHGSTLFTRGETQSLAVVTLGDRQMAQRVDNLVDVDELKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERALEPSLPSEDDFPYTIRVESTITESNGSSSMASVCGGSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKLAGNEMGITAFQMDIKVGGITIPIMREALLQAKDGRKHILAEMLNSSPPPSKRLSPYAPLIHVMKVQPEKINLIIGTGGKKVKSIIEETGVEAIDTRDDGIVKITAKDLTSLEKSKAIISNLTMVPAIGDIYRNCEIKTIAAYGVFVEIAPGREGLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSNSKENTGNPSRNKTAMQKGTDKGTSKKAGKENIEQTNVQKGGAAPMGGSLEDAAKLQKKFIRKGVTATKERPISKEQTKSTSS 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7974578 7999621 + PI0024745.1 Cmetu04g1511 353955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1511 922 SUPERFAMILY Ribonuclease PH domain 2-like 581 684 IPR036345 -
Cmetu04g1511 922 Gene3D - 79 311 IPR027408 -
Cmetu04g1511 922 MobiDBLite consensus disorder prediction 894 915 - -
Cmetu04g1511 922 Gene3D - 398 686 IPR027408 -
Cmetu04g1511 922 MobiDBLite consensus disorder prediction 837 860 - -
Cmetu04g1511 922 CDD S1_PNPase 760 828 - -
Cmetu04g1511 922 Pfam 3' exoribonuclease family, domain 1 96 226 IPR001247 -
Cmetu04g1511 922 Pfam 3' exoribonuclease family, domain 1 453 587 IPR001247 -
Cmetu04g1511 922 Gene3D K Homology domain, type 1 687 759 IPR036612 GO:0003723
Cmetu04g1511 922 FunFam Polyribonucleotide nucleotidyltransferase 390 686 - -
Cmetu04g1511 922 Pfam S1 RNA binding domain 767 829 IPR003029 GO:0003676
Cmetu04g1511 922 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 760 831 - -
Cmetu04g1511 922 ProSiteProfiles Type-1 KH domain profile. 690 750 - -
Cmetu04g1511 922 CDD KH-I_PNPase 688 757 - -
Cmetu04g1511 922 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 85 832 IPR012162 GO:0003723|GO:0004654|GO:0006402
Cmetu04g1511 922 SMART S1_6 758 829 IPR022967 -
Cmetu04g1511 922 FunFam Polyribonucleotide nucleotidyltransferase 687 756 - -
Cmetu04g1511 922 NCBIfam polyribonucleotide nucleotidyltransferase 419 830 IPR012162 GO:0003723|GO:0004654|GO:0006402
Cmetu04g1511 922 SUPERFAMILY Ribosomal protein S5 domain 2-like 426 623 IPR020568 -
Cmetu04g1511 922 SUPERFAMILY Ribosomal protein S5 domain 2-like 88 226 IPR020568 -
Cmetu04g1511 922 FunFam Polyribonucleotide nucleotidyltransferase 85 315 - -
Cmetu04g1511 922 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 66 868 IPR012162 GO:0003723|GO:0004654|GO:0006402
Cmetu04g1511 922 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 685 754 IPR036612 GO:0003723
Cmetu04g1511 922 SUPERFAMILY Nucleic acid-binding proteins 757 833 IPR012340 -
Cmetu04g1511 922 ProSiteProfiles S1 domain profile. 760 829 IPR003029 GO:0003676
Cmetu04g1511 922 Pfam 3' exoribonuclease family, domain 2 230 292 IPR015847 -
Cmetu04g1511 922 Pfam KH domain 694 751 IPR004088 GO:0003723
Cmetu04g1511 922 SUPERFAMILY Ribonuclease PH domain 2-like 229 313 IPR036345 -
Cmetu04g1511 922 MobiDBLite consensus disorder prediction 829 922 - -
Cmetu04g1511 922 Gene3D - 760 831 IPR012340 -
Cmetu04g1511 922 SMART kh_6 689 754 IPR004087 GO:0003676
Cmetu04g1511 922 CDD RNase_PH_PNPase_2 453 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1511 K00962 - - csv:101205015 1721.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1511 Cmetu-Chr4:7974578 Cmetu04g2923 Cmetu-Chr4:9572923 5.20E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005461 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 0 1 6 1 38