Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1576 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCAACCCCAAATCAGTATGTAACATCTCCCCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCGTACTTGCATGAATCTCGACATCTACATGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAAAATCATCAAAATGAGGTGGCATCAGGTGATAAATCGCAGCCAAATATAAATCTGAATTCTGATAGAAGTGATCTTGCTTCTTCAGAGAACTGA 606 42.08 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQPTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 644649 655642 + PI0009806.4 Cmetu04g1576 354020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1576 201 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Cmetu04g1576 201 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Cmetu04g1576 201 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Cmetu04g1576 201 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 191 IPR001289 GO:0003700|GO:0006355
Cmetu04g1576 201 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Cmetu04g1576 201 MobiDBLite consensus disorder prediction 167 201 - -
Cmetu04g1576 201 MobiDBLite consensus disorder prediction 1 50 - -
Cmetu04g1576 201 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
Cmetu04g1576 201 MobiDBLite consensus disorder prediction 23 47 - -
Cmetu04g1576 201 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
Cmetu04g1576 201 Gene3D - 107 168 - -
Cmetu04g1576 201 MobiDBLite consensus disorder prediction 162 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1576 K08064 - - csv:101205549 368.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1576 Cmetu-Chr4:644649 Cmetu05g1173 Cmetu-Chr5:22022307 1.20E-28 dispersed
Cmetu04g1576 Cmetu-Chr4:644649 Cmetu01g1062 Cmetu-Chr1:26178320 2.50E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1173 . 18 271 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.5 4.0e-54 208.8
Cmetu02g0337 . 58 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 59.9 2.4e-44 176.4
Cmetu04g1576 . 59 199 CCAAT-HAP2 Transcription Factor Family AT2G34720 59.3 1.1e-38 156.8
Cmetu04g1576 . 1 199 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.3 3.2e-50 195.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7765 PF02045 CBFB_NFYA 4.00E-26 No_clan Cmetu TF