Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1703 ATGCCATCTTCTTCTGCACACCACATGTTCGACGTAATGCTTGAACCAGATAAAAGAACTTTGGATCCATTTGTGGTGCCGTGTATGGGGAGTGATGTGCCTCAACCGCTAGAATCCCTTCATGGTCAGTTTGTTCCGCCATTTCTGTGGAAGACTTTCGATATTGTTGAGGATCCTGCGCTTGATTCGATTGTATCTTGGGGTTCAGCAGGGCAGAGCTTTGTGGTTTGGGATCCCGTGGAGTTTTCTAGGGTGATTCTTCCTTCTAATTTCAAGCACAACAACTTCTCCAGTTTTGTCAGACAGCTAAATACTTATGGATTCCGCAAGATAGATGCGGACAAGTGGGAGTTTGCGAATGAAGATTTTCAACGTGGGAAGAAACACTTACTAAAGAACATTCAGAGGCGGAAATCACCTCATTCTCAGCAGATTGGAAGTTTGATAGGGCCATCTACTGGAGGAGGGAAGTCTGGATTAGAAGATGAGATTGGAAGGTTAAAGAAAGAGAGGAGCATGTTAATGCAGGAGGTTGTGGAATTGCAGCAGCAACAGAAGGGAACTGCTCAGCATGTGAATACGGTGAACCGGCGCCTCCAATCAGCAGAGCAGAGGCAGAAGCAGATGATTTCTTTCTTGGCAAAGTTGCTTCGGAATCCAGAATTCTTATTTCGCTTGCAGAAAAAGAAGGAACAGAAAGATATTGATTCCCCAAGAACGAAACGGAGATTTGTTAAGCAGCATAAACATGAAGATGGTTTTACACCTTCCATGGAAGGGCAGATTATTAAATACCAACCTGATTGGGAAAATCTAGCCAGATCTTCAACCACACCGGATTTGAATCCAAGCCTGCTTGAAGGACCTTTTGCTTACCTTCTGCAGGGAGTATTTGGAGAATTGGGATCAATTCCAGAAGGCATACCTAATTTTCAATTTAAGAATGCTTCATCAAGCGATGTAATTGCGTCTGAGGAATTAGCATTCCATCATGGAGTAGTAAAACCAACAGAGGAGTTGAGGGTGGATGCTTCAAACAAGTCAATGGACGATCAACATTTCAAGGGAAAGGCTATTGAGAGTCCCCCAGAGGAATTGAATCCTGCCTATTTTCTCTCTTTGGCAGAGGATATTCTTCAATCCTCACATCATGGAACTGGAGGCATCATTAAACCAGAAGAAATTTGGGATGCATATTTGAATGCCGATGTTGGTCCGTCCGGTTCAAGCACCAAGTTGTGGAGCAATCCAGAATGCTTTGAGGATCCATTTTTGCAAATCTCTAGCGAACAATCACCAATTTGGGATTTTGGCTCCCAGCAGGCCGGAGATTCGAGCACAGATAAGTGGCATGAAATCATTGGGCAATCTATTCAACAAGAAGCCGGAGTTCATGGAAGATTGGAAGCAAGGGCCTTGATCCACTGTGATTTTCTTTTCCAGCTTTGA 1449 43.89 MPSSSAHHMFDVMLEPDKRTLDPFVVPCMGSDVPQPLESLHGQFVPPFLWKTFDIVEDPALDSIVSWGSAGQSFVVWDPVEFSRVILPSNFKHNNFSSFVRQLNTYGFRKIDADKWEFANEDFQRGKKHLLKNIQRRKSPHSQQIGSLIGPSTGGGKSGLEDEIGRLKKERSMLMQEVVELQQQQKGTAQHVNTVNRRLQSAEQRQKQMISFLAKLLRNPEFLFRLQKKKEQKDIDSPRTKRRFVKQHKHEDGFTPSMEGQIIKYQPDWENLARSSTTPDLNPSLLEGPFAYLLQGVFGELGSIPEGIPNFQFKNASSSDVIASEELAFHHGVVKPTEELRVDASNKSMDDQHFKGKAIESPPEELNPAYFLSLAEDILQSSHHGTGGIIKPEEIWDAYLNADVGPSGSSTKLWSNPECFEDPFLQISSEQSPIWDFGSQQAGDSSTDKWHEIIGQSIQQEAGVHGRLEARALIHCDFLFQL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4818895 4822823 + PI0002745.1 Cmetu04g1703 354147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1703 482 Coils Coil 157 184 - -
Cmetu04g1703 482 FunFam Heat stress transcription factor B-4 40 138 - -
Cmetu04g1703 482 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu04g1703 482 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu04g1703 482 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu04g1703 482 Gene3D - 41 138 IPR036388 -
Cmetu04g1703 482 MobiDBLite consensus disorder prediction 141 161 - -
Cmetu04g1703 482 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu04g1703 482 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu04g1703 482 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu04g1703 482 SUPERFAMILY Winged helix DNA-binding domain 44 137 IPR036390 -
Cmetu04g1703 482 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 34 250 IPR027725 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1703 K09419 - - csv:101208693 864.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1321 Cmetu-Chr2:16538777 Cmetu04g1703 Cmetu-Chr4:4818895 1.70E-22 dispersed
Cmetu04g1533 Cmetu-Chr4:2152590 Cmetu04g1703 Cmetu-Chr4:4818895 3.30E-26 dispersed
Cmetu04g1703 Cmetu-Chr4:4818895 Cmetu06g1701 Cmetu-Chr6:29828413 1.70E-55 dispersed
Cmetu04g1703 Cmetu-Chr4:4818895 Cmetu05g1161 Cmetu-Chr5:19631986 2.20E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1038 . . . . . . Bma04g01599 . Cmo06g00442 Cmo14g00267 . . . . . . Cpe08g01045 . . . . . . . . . . . . . . . . Cone13ag1212 Cone19ag1197 . . . Cme04g02434 . . . . . . . . Sed02g0565 . . Cma06g00445 Cma14g00279 Car06g00386 Car14g00250 Cpe03g00238 . Bhi11g01977 Tan08g1773 Cmetu04g1703 . . . . Cla10g01839 Cam10g1899 Cec10g1954 Cco10g1925 Clacu10g1915 Cmu10g2660 . Lsi03g01940 Csa03g03376 Chy04g01969 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0897 . 34 234 HSF AT4G17750 60.1 2.7e-61 233.4
Cmetu03g1160 . 40 240 HSF AT4G17750 52.7 4.8e-58 222.6
Cmetu01g0604 . 121 327 HSF AT4G17750 55.3 5.3e-57 219.2
Cmetu04g1703 . 46 267 HSF AT4G17750 50.2 1.9e-54 210.7
Cmetu05g1296 . 60 252 HSF AT4G17750 50.2 9.4e-46 181.8
Cmetu11g1527 . 12 114 HSF AT4G17750 69.9 5.9e-40 162.5
Cmetu03g2201 . 20 118 HSF AT4G17750 71.7 6.6e-39 159.1
Cmetu07g0842 . 20 118 HSF AT4G17750 69.7 2.5e-38 157.1
Cmetu09g1249 . 20 115 HSF AT4G17750 69.8 1.8e-36 151.0
Cmetu06g0897 . 7 239 HSF AT5G16820 55.0 1.1e-59 228.0
Cmetu05g1161 . 41 246 HSF AT5G16820 55.1 1.5e-59 227.6
Cmetu01g0604 . 122 331 HSF AT5G16820 55.6 1.2e-56 218.0
Cmetu03g1160 . 41 240 HSF AT5G16820 52.6 2.2e-55 213.8
Cmetu11g1527 . 13 115 HSF AT5G16820 72.8 2.9e-39 160.2
Cmetu06g1701 . 13 514 HSF AT1G32330 53.8 3.5e-122 435.6
Cmetu06g0897 . 23 224 HSF AT1G32330 53.5 2.5e-59 226.9
Cmetu01g0604 . 110 327 HSF AT1G32330 51.8 8.0e-58 221.9
Cmetu05g1161 . 27 226 HSF AT1G32330 53.1 1.8e-57 220.7
Cmetu03g1160 . 29 221 HSF AT1G32330 53.7 4.9e-55 212.6
Cmetu12g1147 . 13 191 HSF AT1G32330 50.5 4.3e-43 172.9
Cmetu11g1527 . 11 118 HSF AT1G32330 67.9 4.4e-40 162.9
Cmetu03g2201 . 20 117 HSF AT1G32330 71.4 4.1e-38 156.4
Cmetu05g1161 . 41 245 HSF AT3G02990 55.0 5.8e-61 232.3
Cmetu06g0897 . 35 238 HSF AT3G02990 56.2 1.4e-59 227.6
Cmetu01g0604 . 122 339 HSF AT3G02990 53.6 5.4e-59 225.7
Cmetu03g1160 . 41 240 HSF AT3G02990 51.7 2.1e-55 213.8
Cmetu11g1527 . 13 106 HSF AT3G02990 74.5 3.6e-39 159.8
Cmetu06g0897 . 11 234 HSF AT2G26150 59.0 2.9e-70 262.7
Cmetu01g0604 . 110 326 HSF AT2G26150 55.0 1.1e-64 244.2
Cmetu06g1701 . 8 243 HSF AT2G26150 55.7 5.6e-61 231.9
Cmetu12g1147 . 5 155 HSF AT2G26150 53.3 3.7e-41 166.0
Cmetu11g1527 . 5 118 HSF AT2G26150 62.3 1.5e-37 154.1
Cmetu04g1703 . 30 272 HSF AT5G03720 57.1 1.1e-71 267.7
Cmetu11g1527 . 13 137 HSF AT4G18880 64.0 4.2e-44 176.0
Cmetu06g1519 . 3 460 HSF AT4G13980 51.6 1.2e-111 400.6
Cmetu11g1527 . 1 137 HSF AT4G13980 59.1 3.6e-39 159.8
Cmetu06g0897 . 23 215 HSF AT5G43840 54.4 1.1e-54 210.7
Cmetu06g0897 . 19 313 HSF AT3G22830 54.5 3.7e-88 322.4
Cmetu05g1161 . 29 345 HSF AT3G22830 51.4 3.1e-87 319.3
Cmetu03g1160 . 29 251 HSF AT3G22830 53.2 4.8e-64 242.3
Cmetu06g1701 . 29 242 HSF AT3G22830 58.9 9.1e-63 238.0
Cmetu05g1296 . 50 259 HSF AT3G22830 51.9 1.2e-51 201.1
Cmetu05g1161 . 26 320 HSF AT3G51910 54.2 9.4e-72 267.3
Cmetu03g1160 . 29 221 HSF AT3G51910 57.0 2.1e-55 213.0
Cmetu05g1161 . 27 334 HSF AT3G63350 50.2 5.9e-69 258.1
Cmetu06g0897 . 13 224 HSF AT3G63350 52.1 2.4e-54 209.5
Cmetu03g1160 . 29 228 HSF AT3G63350 53.2 8.6e-52 201.1
Cmetu11g1527 . 5 139 HSF AT3G63350 56.9 2.1e-37 153.3
Cmetu09g1249 . 16 336 HSF AT4G11660 54.1 2.0e-80 296.6
Cmetu07g0842 . 16 119 HSF AT4G11660 74.0 1.4e-44 177.6
Cmetu03g2201 . 16 121 HSF AT4G11660 71.7 1.8e-44 177.2
Cmetu04g0111 . 21 117 HSF AT4G11660 72.2 2.1e-37 153.7
Cmetu06g1701 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cmetu08g1024 . 37 215 HSF AT2G41690 57.0 3.6e-46 182.2
Cmetu03g2201 . 19 374 HSF AT1G46264 52.0 4.1e-88 322.0
Cmetu07g0842 . 19 326 HSF AT1G46264 55.2 6.8e-83 304.7
Cmetu02g0293 . 18 192 HSF AT1G46264 51.4 2.1e-44 176.8
Cmetu06g1701 . 33 138 HSF AT1G46264 73.6 3.8e-41 166.0
Cmetu11g1527 . 5 105 HSF AT1G46264 68.3 9.6e-37 151.4
Cmetu06g0897 . 34 234 HSF AT4G17750 60.1 2.7e-61 233.4
Cmetu03g1160 . 40 240 HSF AT4G17750 52.7 4.8e-58 222.6
Cmetu01g0604 . 121 327 HSF AT4G17750 55.3 5.3e-57 219.2
Cmetu04g1703 . 46 267 HSF AT4G17750 50.2 1.9e-54 210.7
Cmetu05g1296 . 60 252 HSF AT4G17750 50.2 9.4e-46 181.8
Cmetu11g1527 . 12 114 HSF AT4G17750 69.9 5.9e-40 162.5
Cmetu03g2201 . 20 118 HSF AT4G17750 71.7 6.6e-39 159.1
Cmetu07g0842 . 20 118 HSF AT4G17750 69.7 2.5e-38 157.1
Cmetu09g1249 . 20 115 HSF AT4G17750 69.8 1.8e-36 151.0
Cmetu06g0897 . 7 239 HSF AT5G16820 55.0 1.1e-59 228.0
Cmetu05g1161 . 41 246 HSF AT5G16820 55.1 1.5e-59 227.6
Cmetu01g0604 . 122 331 HSF AT5G16820 55.6 1.2e-56 218.0
Cmetu03g1160 . 41 240 HSF AT5G16820 52.6 2.2e-55 213.8
Cmetu11g1527 . 13 115 HSF AT5G16820 72.8 2.9e-39 160.2
Cmetu06g1701 . 13 514 HSF AT1G32330 53.8 3.5e-122 435.6
Cmetu06g0897 . 23 224 HSF AT1G32330 53.5 2.5e-59 226.9
Cmetu01g0604 . 110 327 HSF AT1G32330 51.8 8.0e-58 221.9
Cmetu05g1161 . 27 226 HSF AT1G32330 53.1 1.8e-57 220.7
Cmetu03g1160 . 29 221 HSF AT1G32330 53.7 4.9e-55 212.6
Cmetu12g1147 . 13 191 HSF AT1G32330 50.5 4.3e-43 172.9
Cmetu11g1527 . 11 118 HSF AT1G32330 67.9 4.4e-40 162.9
Cmetu03g2201 . 20 117 HSF AT1G32330 71.4 4.1e-38 156.4
Cmetu05g1161 . 41 245 HSF AT3G02990 55.0 5.8e-61 232.3
Cmetu06g0897 . 35 238 HSF AT3G02990 56.2 1.4e-59 227.6
Cmetu01g0604 . 122 339 HSF AT3G02990 53.6 5.4e-59 225.7
Cmetu03g1160 . 41 240 HSF AT3G02990 51.7 2.1e-55 213.8
Cmetu11g1527 . 13 106 HSF AT3G02990 74.5 3.6e-39 159.8
Cmetu06g0897 . 11 234 HSF AT2G26150 59.0 2.9e-70 262.7
Cmetu01g0604 . 110 326 HSF AT2G26150 55.0 1.1e-64 244.2
Cmetu06g1701 . 8 243 HSF AT2G26150 55.7 5.6e-61 231.9
Cmetu12g1147 . 5 155 HSF AT2G26150 53.3 3.7e-41 166.0
Cmetu11g1527 . 5 118 HSF AT2G26150 62.3 1.5e-37 154.1
Cmetu04g1703 . 30 272 HSF AT5G03720 57.1 1.1e-71 267.7
Cmetu11g1527 . 13 137 HSF AT4G18880 64.0 4.2e-44 176.0
Cmetu06g1519 . 3 460 HSF AT4G13980 51.6 1.2e-111 400.6
Cmetu11g1527 . 1 137 HSF AT4G13980 59.1 3.6e-39 159.8
Cmetu06g0897 . 23 215 HSF AT5G43840 54.4 1.1e-54 210.7
Cmetu06g0897 . 19 313 HSF AT3G22830 54.5 3.7e-88 322.4
Cmetu05g1161 . 29 345 HSF AT3G22830 51.4 3.1e-87 319.3
Cmetu03g1160 . 29 251 HSF AT3G22830 53.2 4.8e-64 242.3
Cmetu06g1701 . 29 242 HSF AT3G22830 58.9 9.1e-63 238.0
Cmetu05g1296 . 50 259 HSF AT3G22830 51.9 1.2e-51 201.1
Cmetu05g1161 . 26 320 HSF AT3G51910 54.2 9.4e-72 267.3
Cmetu03g1160 . 29 221 HSF AT3G51910 57.0 2.1e-55 213.0
Cmetu05g1161 . 27 334 HSF AT3G63350 50.2 5.9e-69 258.1
Cmetu06g0897 . 13 224 HSF AT3G63350 52.1 2.4e-54 209.5
Cmetu03g1160 . 29 228 HSF AT3G63350 53.2 8.6e-52 201.1
Cmetu11g1527 . 5 139 HSF AT3G63350 56.9 2.1e-37 153.3
Cmetu09g1249 . 16 336 HSF AT4G11660 54.1 2.0e-80 296.6
Cmetu07g0842 . 16 119 HSF AT4G11660 74.0 1.4e-44 177.6
Cmetu03g2201 . 16 121 HSF AT4G11660 71.7 1.8e-44 177.2
Cmetu04g0111 . 21 117 HSF AT4G11660 72.2 2.1e-37 153.7
Cmetu06g1701 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cmetu08g1024 . 37 215 HSF AT2G41690 57.0 3.6e-46 182.2
Cmetu03g2201 . 19 374 HSF AT1G46264 52.0 4.1e-88 322.0
Cmetu07g0842 . 19 326 HSF AT1G46264 55.2 6.8e-83 304.7
Cmetu02g0293 . 18 192 HSF AT1G46264 51.4 2.1e-44 176.8
Cmetu06g1701 . 33 138 HSF AT1G46264 73.6 3.8e-41 166.0
Cmetu11g1527 . 5 105 HSF AT1G46264 68.3 9.6e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013063 0 1 0 2 0 1 2 0 0 1 1 2 0 1 1 1 1 2 2 0 1 1 0 1 1 1 1 2 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7770 PF00447 HSF_DNA-bind 1.60E-31 CL0123 Cmetu TF