Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1739 ATGGAAAACTTAGATGGAAAGTGTTCAGATTCTTCGCAATGCGTTCGCGTTGCTGTTAATATTAGACCTTTGATTACACCGGAGCTAATGTTGGATGTTCAAATTGGGTCGCATATATTCACTTACGATAATGTGTATGGTAGTGCTGGATCGCCATCTTATGCATTATACGACGACTGTGTTGCTCCATTGGTGGAGGCATTATTTCAGGGATATAATGCTACTGTTCTTGCTTATGGACAGACGGGTTCTGGAAAGACCTACACAATGGGAACAAATTATAGCGGCGAAGGAACCAATGATGGAGTAATACCTAAAGTCATGGAAAAAATATTTAAAAAGGTCGAGGCAATGAAGGAATCGACAGAGTTCTTGATCAGAGTATCATTTATTGAGATATTCAAGGAAGAAGTTTTTGATTTGCTTGATGCAAGTACTTGCGTTAATACAAAGGGTGAAGGAACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACTGTTAATGGTGGAATTACGCTTGTTGGTGTCACTGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGTCAGTCAAGTCGATCACATGCCATCTTTACTATTACTATGGAGCAAAAGAAAAAGCTTGGGCAGGGCATGTCTCATGATGATACATGCGAGGACATTCTATGTGCAAAGCTCCATTTGGTGGATCTTGCTGGTTCTGAAAGAGCAAAACGAACAGGTGCTGATGGCGTGCGCTTTAAAGAAGGTGTTCATATCAACAAAGGCCTTTTGGCACTCGGCAATGTCATAAGTGCACTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCATGTTCCCTATCGTGATAGCAAGTTAACGCGTTTGCTACAGGATTCTCTTGGAGGCAACAGCAGAACGGTGATGATCGCTTGTGTGAGTCCTGCCGACTCAAATGCAGAAGAGACCCTAAATACGCTGAAATATGCCAATCGTGCTCGCAATATTCAAAATAAAGCAGTCATCAACCGAGATCCTGTAGGAGCTCAAATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTTCTGTTCTATCGTGGTGATGCAGGTTTACCGTATGAAGAGCTACAGATTCTAAAGCACAAAATATCATTGCTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAACTGCAAGAACGTCGAGTCACTTGTGACCATCTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAACTTGCCATGATAATTGAATCTGTGCGGAATGGAAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAATTGGTTAAGAGTTACGTTTCAAAAATTCAAGAGCTAGAAGGCGAGGTACTGAGATTGCAAAGCATTAAGAGTTCAAAACACAGTCAATATGCTGATCTTGCGGAGTCTGATGATGATAGGCCCCAGTCTGGTAACATCTTATTTCCATGTTCAAATGAATATTCGTCGGAATATGATCCCAAAGCTGTAGACATTTCAGATGGAATTGAAGATCAGGAAAAGGAGCTTGAACATTCGACAATGCAAGAAAGACTAGACAGGGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCCGGTACGGATACCTCTGTTCTTAAACAACATTATGAGAAAAAGGTCCACGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCAAACATATCTTCTACATCTGATGATGGGGCTCAAAAGTTGAAGCAAGAATATCTTCAGAAATTGAATTTCTTGGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAAGCTCAACTATTGAGACAGAAGCAAAAGAGTGATGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAGAAGGTTCAACTTCAACACAAGATTAAACAGGAATCTGAGCAATTTAGATCATGGAAGGCTTCAAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAATGAATATGAGATGCACAAGCTCTTGGCTTTGAATCAAAGACAGAAGATGGTCTTGCAACGAAAGACAGAAGAAGCTGCCCAGGCAACAAAAAGGCTTAAAGAGCTTTTAGAATCTCGAAAGGCAGCACGTGAAACTTCCAGTGGGGGATCAAATGGTCCTGGAATTCAGGCACTAATGCAGAATATTGAGCATGAGCTTGAAGTTACGGTTCGGGTGCATGAAGTTCGTTCTGAATATGAACGTCAAATGGAAGAGAGGTCTAAGATGGCCAAAGAATTGGCCAAGCTTAAGGAGGAGGAACTGAACAGAGGATCTAATTTAAGCGACCGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTTGAAAACATGCTCGCTACATCATCCAGCTCTCTGGTTTCTATGGCCTCACATTTGTCGGAGGCAGAAGAGCGTGAACGCATTCTTGGTGGCAGGGGACGTTGGCATCAAGTTCGCTCTCTAGCCGATGCAAAGAATATTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGGTAA 2682 41.83 MENLDGKCSDSSQCVRVAVNIRPLITPELMLDVQIGSHIFTYDNVYGSAGSPSYALYDDCVAPLVEALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGTNDGVIPKVMEKIFKKVEAMKESTEFLIRVSFIEIFKEEVFDLLDASTCVNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGQGMSHDDTCEDILCAKLHLVDLAGSERAKRTGADGVRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGKSLDEIESNYDKDCELVKSYVSKIQELEGEVLRLQSIKSSKHSQYADLAESDDDRPQSGNILFPCSNEYSSEYDPKAVDISDGIEDQEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRSWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARETSSGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEELNRGSNLSDRTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERILGGRGRWHQVRSLADAKNIMNFLMNLASSSR 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31483483 31490086 + PI0016922.1 Cmetu04g1739 354183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1739 893 FunFam Kinesin-like protein 174 375 - -
Cmetu04g1739 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 385 IPR027417 -
Cmetu04g1739 893 Coils Coil 579 613 - -
Cmetu04g1739 893 CDD KISc_KIF4 14 352 - -
Cmetu04g1739 893 Coils Coil 542 573 - -
Cmetu04g1739 893 ProSiteProfiles Kinesin motor domain profile. 14 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 10 891 IPR027640 GO:0003777|GO:0007018
Cmetu04g1739 893 Coils Coil 727 754 - -
Cmetu04g1739 893 Coils Coil 366 386 - -
Cmetu04g1739 893 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 PRINTS Kinesin heavy chain signature 247 265 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 PRINTS Kinesin heavy chain signature 301 322 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 PRINTS Kinesin heavy chain signature 71 92 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 Coils Coil 622 687 - -
Cmetu04g1739 893 SMART kinesin_4 12 359 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 Pfam Kinesin motor domain 34 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmetu04g1739 893 Coils Coil 781 808 - -
Cmetu04g1739 893 ProSitePatterns Kinesin motor domain signature. 246 257 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmetu04g1739 893 Gene3D Kinesin motor domain 9 384 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1739 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1479 Cmetu-Chr2:22237897 Cmetu04g1739 Cmetu-Chr4:31483483 2.90E-60 dispersed
Cmetu04g1739 Cmetu-Chr4:31483483 Cmetu11g2569 Cmetu-Chr11:26851685 7.40E-57 dispersed
Cmetu07g2206 Cmetu-Chr7:22645307 Cmetu04g1739 Cmetu-Chr4:31483483 7.20E-245 transposed
Cmetu08g1838 Cmetu-Chr8:22228189 Cmetu04g1739 Cmetu-Chr4:31483483 8.30E-44 transposed
Cmetu03g0255 Cmetu-Chr3:2954207 Cmetu04g1739 Cmetu-Chr4:31483483 7.60E-49 wgd
Cmetu04g1739 Cmetu-Chr4:31483483 Cmetu08g1777 Cmetu-Chr8:20880997 6.10E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32