Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1771 ATGGCGTCCTCGAACAGACACTGGCCTAGCATGTTCAAGTCCAAACCTTGCAATTCTCATCACCAATGGCAACATGACATCAATACTACTAATCTTTCTTCTTCCACTCCCACTTCCTGCCTTAGATCTGCCCCTTACACTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCTGAACAAATTAGGATTCTTGAAGCAATTTTCAATTCTGGGATGGTGAATCCTCCCCGAGATGAAATTCGAAAAATAAGAGCTCAATTACAAGAATATGGACAAGTGGGTGATGCGAATGTGTTTTATTGGTTTCAAAACAGGAAATCCAGAAGCAAAAACAAACTCCGCCATATCCAAAACTCCAAATCCAATCATAATTCCCAAACCACTACAACAACCGCCATCACCGCCGCCGCCACCACCGCTACTTGTTCTTCCTCTTCTTCCTCTGACAAATCTTCTCCCAAAAAACCTCCAATTAAGATTCTTACCTCCAATAATTCAGTGACTCAAAACTACCTTCAACAACCCACCAACGAGATTTTGCCTGAACCCTTTTTCTTCCCAGTGTCCTCGACACAGACCGGCAGCGGCGGTGGAAGCTGTAATTTGAGTCAAGGGTTTTGCTTCTCAGAGCTGTGTAGTGTAGTGCAGCCAGTTGCTGAACATGGAGTTGGGCCTTGCACAAGCCTGTTGTTGAGTGAAATTATGAGCCCAACTGAAGCCTTAAAGAAAGATTTGGATCAAGACAAGATTAATATGGTGAAATTACAGCCACAATTTATGAATTTTCATCCTTCTAATTTGACGTCCTCTATTACTGATCACACTCTTCCCCAATCCACTATTCCCACACCTCTCACCACTCTTCCATCTCCTACCAATGCAATTCCTCAAGGTGTAGGAGAAGTTTGTGGAGTAGGAAAATCAACGGTATTCATCAATGGTGTGGGGTTCGAGGTGAGTTCTGGACCGTTCAATGTTCGCGAGGCTTTTGGTGATGAAGCCGTTTTGATTCACTCAAATGGTCAGCCTGTTCTCACCAATGACTGGGGTCTCACTCTCCACTCACTCCAACATGGTTCTTACTATTATCTGTTTGCAGTTAATGAGGAGAGGAGGATGCAGAGCCAAATTAGATGA 1164 44.07 MASSNRHWPSMFKSKPCNSHHQWQHDINTTNLSSSTPTSCLRSAPYTTVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKSNHNSQTTTTTAITAAATTATCSSSSSSDKSSPKKPPIKILTSNNSVTQNYLQQPTNEILPEPFFFPVSSTQTGSGGGSCNLSQGFCFSELCSVVQPVAEHGVGPCTSLLLSEIMSPTEALKKDLDQDKINMVKLQPQFMNFHPSNLTSSITDHTLPQSTIPTPLTTLPSPTNAIPQGVGEVCGVGKSTVFINGVGFEVSSGPFNVREAFGDEAVLIHSNGQPVLTNDWGLTLHSLQHGSYYYLFAVNEERRMQSQIR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1851017 1853408 + PI0017090.1 Cmetu04g1771 354215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1771 387 MobiDBLite consensus disorder prediction 29 45 - -
Cmetu04g1771 387 Pfam Homeodomain 60 120 IPR001356 GO:0003677
Cmetu04g1771 387 SUPERFAMILY Homeodomain-like 56 123 IPR009057 -
Cmetu04g1771 387 FunFam WUSCHEL-related homeobox 11 60 127 - -
Cmetu04g1771 387 MobiDBLite consensus disorder prediction 29 65 - -
Cmetu04g1771 387 CDD homeodomain 59 121 IPR001356 GO:0003677
Cmetu04g1771 387 Gene3D - 60 126 - -
Cmetu04g1771 387 ProSiteProfiles 'Homeobox' domain profile. 56 121 IPR001356 GO:0003677
Cmetu04g1771 387 SMART HOX_1 58 125 IPR001356 GO:0003677
Cmetu04g1771 387 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 374 IPR044557 GO:0003700|GO:0050793
Cmetu04g1771 387 MobiDBLite consensus disorder prediction 149 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1771 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1771 Cmetu-Chr4:1851017 Cmetu04g2331 Cmetu-Chr4:6784083 2.90E-26 dispersed
Cmetu04g1771 Cmetu-Chr4:1851017 Cmetu12g1142 Cmetu-Chr12:1521250 9.70E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1142 . 1 193 Wox Gene Family AT3G18010 51.5 1.1e-40 164.5
Cmetu04g2331 . 4 253 Wox Gene Family AT3G03660 50.2 1.4e-52 203.8
Cmetu06g1412 . 1 277 Wox Gene Family AT4G35550 51.0 1.1e-72 270.4
Cmetu07g0405 . 1 188 Wox Gene Family AT4G35550 62.2 2.5e-56 216.1
Cmetu04g1771 . 1 373 Wox Gene Family AT2G33880 50.5 1.2e-67 254.2
Cmetu12g1142 . 1 193 Wox Gene Family AT3G18010 51.5 1.1e-40 164.5
Cmetu04g1771 . 1 373 Wox Gene Family AT2G33880 50.5 1.2e-67 254.2
Cmetu04g2331 . 4 253 Wox Gene Family AT3G03660 50.2 1.4e-52 203.8
Cmetu06g1412 . 1 277 Wox Gene Family AT4G35550 51.0 1.1e-72 270.4
Cmetu07g0405 . 1 188 Wox Gene Family AT4G35550 62.2 2.5e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7777 PF00046 Homeodomain 1.40E-14 CL0123 Cmetu TF