Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1809 ATGTCCTCGGAAGACATCAATGGCCTCGAGCCCCACCTCGTCTTCCAAAACGAATCCCACCCTTTCAATTGCTCTTCCACCCCCCACCGCCGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGTCGTCGACCGTGAACGATTCTTTTCCCAACAGGGTGAGGATTTCCGCCGGAATGTTTTCGGTCACAACCGGAATTGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGATCGGATGAGGAAGAAGATGATGACGATGACGATGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTGACAGTAACAATGATAGAAGTGATCAGAGTAGTGGGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCTTTTGGTGGGACTTTGTTAGTCAAGGATGCTTTGGTTGGGTCTTCAGGAGCAACTCAGAGTGAAAACAATCCGCAGGGAAGGTTGGGGAACTATCCAAATGCGGTTACAGTTGCAGAGCCTGATAGTGAAGCGTACTATTCTCAGTATTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAGGATTTGAGTATGGAAAATGGACGTGGTTTTGGGAGAAGGGATGTTTCGTTTTCAGGAGAGCCTGGAGAGTCTTTGAGAGCAATTCTCACTGACCCTGTGACGGGCGTTCTCATGAATGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTATTTCACCGATCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAAGGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAGGGGAACAAGAGGACACCGCAACGTTTCGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTTTGTCATTTTTTGTTCTGATTCTCAATATTTTTTTTCTTCATTCTGTCCATTACAAGAAGGAAGTAGCATGTTGTTTCCCATTAATCTTTTGTGTTTAATTCTGATGATCGTCTTTGCCTATAGAAAGTGTTGGAAGTCATGTAAAATTAATGATAAAAGACAAATAGTCTTCTATGCTAAGTTTAGAATTATGGCATAG 1368 44.52 MSSEDINGLEPHLVFQNESHPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPVVDRERFFSQQGEDFRRNVFGHNRNWNGTARTGSGKGSDEEEDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDSNNDRSDQSSGGLKNGINKLGNGKLKQHSSFGGTLLVKDALVGSSGATQSENNPQGRLGNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKDLSMENGRGFGRRDVSFSGEPGESLRAILTDPVTGVLMNDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFVIFCSDSQYFFSSFCPLQEGSSMLFPINLLCLILMIVFAYRKCWKSCKINDKRQIVFYAKFRIMA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27222325 27227069 + PI0010244.2 Cmetu04g1809 354253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1809 455 MobiDBLite consensus disorder prediction 122 157 - -
Cmetu04g1809 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Cmetu04g1809 455 SUPERFAMILY RING/U-box 247 318 - -
Cmetu04g1809 455 MobiDBLite consensus disorder prediction 91 115 - -
Cmetu04g1809 455 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 75 396 - -
Cmetu04g1809 455 MobiDBLite consensus disorder prediction 1 41 - -
Cmetu04g1809 455 ProSiteProfiles U-box domain profile. 247 319 IPR003613 GO:0004842|GO:0016567
Cmetu04g1809 455 MobiDBLite consensus disorder prediction 71 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1809 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1809 Cmetu-Chr4:27222325 Cmetu10g0743 Cmetu-Chr10:12860219 1.10E-168 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0670 . 2 729 Plant U-box Gene Family AT5G57035 53.0 2.1e-225 779.2
Cmetu04g1809 . 196 397 Plant U-box Gene Family AT5G05230 55.1 2.0e-53 206.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40