Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1824 ATGGTTGATTATAGTTTACCAGTATCGAAGAGAACGAGGTTAAGACGAGCTATGGGTGGAATGGAGCATTTTGAGCAGAGGAGGAAGAGGAGGAAGAAGAGCAGATCGGATTCCGGCAGTGATAATGTTCGAGGTAAAGCTTTGAGTGGTAAAAGGGTTTATGATTGTGAACATTCTAGTGTTAATCGAACACTGAAGGTGGATTGTGATGATAGTGATGGGGATAGTTTAGAAGTAATTGATGCTCTAACATTTGGTAAAGAAGGTGGAGATTCGGTTACATTTGTGGGTTCTGATAGTTCGGGGTTGAAGAATGTTAAAGAATTTTATTCGAAGGGGTTGAAGAAAGGGAATGCTGATTTGATTGATTTGGAGAATGATGTTATTTTGTTAGATGAGGAAGAGGGATTTGAATCTGTGAACTCTATGTGTTCAGTTTCAAAGGGAAAAGAAGGTGTAGAGATATCTCCAGATAAAAGTGTGGGGGGAAGTGATTGTTTGAACTCTAATGGTTGTGAGAGTGGTGGTTGCTCATCCAAGACTGAGCCAACGTGTTGTTCGGATGATGCTGTAGATGAGTCCACTGAATTCGCATCCTCAAGTGAAGAGGAGTTTGATGACTCTAGTGATCGAAATTACGAATTAGAAGAATCGGACGGGTTAAATTCAGAGTCCTCTAGTTCAGAAGATGAGAAGAGTCATGGAAGTTACTATGCAGAAATAGGAGATACAAGGGAGAGAAAGGCGAGAAGGAAAAAGGGAAATTTGCTTGAAGGTGGATTAAGAAGGAAAGCTTTTGGCTTAGATATATTTGTTGATTTTGACGAGGATGGACATAAGAAAAATGATGAGGTTGGTGAACAGGTTAACTGTATTGCACGAAGAACTCGTTCACGGTTTGGTTTTAGGGCTAGGAAAATAAATACCAATCTTGGAACTGTCAGTCAGCCATTCAATGTTGACGAGGAAGAGTCGGATTTTCAGTGTGATGAGAAAGAAGTAGGTTCTTCATCAAGGCATGACAGTGGGGATTCTTGTGATAGTGATAGTACTACTGGTGATGAAATTTACAAGCCATGGGGCTGGAGTAGTAGTAAAAAGAAAACTCAGTTCAACAATCAAAGTAATGATGATGATTTCTTATCTGAACAAAAAGATGATGGCTTCTTATCTGAAAAAAAAGATGATGATACTAACAAGGTTGAGAGTTTTCATGTGGGGAGTAAAATTTGGAACAGTAGAAGCTCACCTGAAACAAATAACAACCGGAGCAAAGATTTTGAGAAGGTTTGTCCAGAGAATGGCCATGAATTTCATGATATTGTTAGAACAAAAGGCCGCGATAGGCCGAGAGGTATTGATGTTTTCAATATTCTTATAGATTCCATAGTTGCGGACAAAGAACTGCCTTCAGTTGAGTTAGATCTTCCTACAAGTCAAGCCTCCCAAATGCCTCTTCCTTTGAAGTTTGGATTGATGGAACCACGTCTTCCAGAGAAGTCAGAAGAAGAAAAAGAATTGGACAAACTCTGGGCAGAGCTTGACTTTGCTCTCAGATCCAGCGAGATTGGGCTGGTGGATTGTAATTCAGTTGAACACGAAGATGCCTTTCCTTCAAAGCTTGAGCAAGTGGATCTGTGTCTTCGCGGTGATCATCAGCTCATACTTGATGAACAAATTGGACTTAAATGCAGATGCTGTTCATATGTGAAATTGGAAATCAGGGATATTGCCCCTTCTTTTGATACAAATCCACATGGAAGGTCAAAGAAGAGGAATTCTGGCTCTTTTGAGCATGTTAAATACGATGGCCTTGAACAGGATGCTGATTGTGACGCCCATGACGGTTCTGATTCACGATCTCATTTTGGACAAACAGTGTGGGATATCATTCCTGGCATAAGGAATAGCATGTACCCACACCAGCGTGAAGGCTTTGAATTTATTTGGAAAAATATAGCCGGAGGGATTTATCTTGATGAGTTAAGAGAGAGAAACGGCTCAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTGACAATTAATTTTCTTCAGACATACATGAAATTAAATCCTACATGTCGGCCTATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGGATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGATTTCTCTTTCGAGGAGAATATGTCGGCACTTAAGTTTTTGATGCAAGCTTCTCCATCAGGTCAAAATGTGGACAACGTACGGCTTGTAAAACTATTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAATTAGTTACAGATTGTTTGAAAGATTAGCTGGAGTTCGGAATGATTCTAAATGTGATAAAGTAAGGAATGTCCTTTTGGAGCTACCTGATCTTGTGGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCTAAAATTAAGACAGAAAGGCGGATCATCCTCTCTGGAACTCCTTTCCAGAATAATTTTACTGAATTTTCTAATACACTTAGGTTGGTGAGGCCAAATTTTGCAAAAGAAAGTAATACTGTAGGTGATGAATGCATGGATAAGAAGCGTGGGCGACCAAAAAATATTACAAGAGGAAAGTGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAACTGGAAAGTGCTGAATTGAAAGAAATCAGAGCCTTGATCAATCCATTTGTGCATGTGTATAGGGGCAGCATACTACAGGAGAAACTTCCAGGGTTGAGGAAATCTACAGTTATATTATGGCCAGCAGAGCTGCAGAAGAGTTTTCTCGAGAGAGTTCAAGCAAGGAAGAATTCTTTTGAAGTGGAATATGTTGAGTCCTTGGTCTCTGTACATCCGTCCCTGATACTGAAATGTGATAAAGGAGATTGTGAAGTTGACAAGGACATGTTAGAGAGGTGTAGATTGAATCCTGAACTAGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTCTGAGTGAAGCTTTGAATGAAAAAGTTTTAGTTTTCAGCCAATATATTGAACCATTATCCTTTATAGAAGAACATCTTAAGTTTCATTTTAAATGGACTGAAGGGATAGAGTTGTTTCATATGGATGGAAAACTCAGGGTATTGCTTGCATCTACAAAGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCGTCGGTGGAAAGGCAAGCCATATGTCGAGCATATAGACTTGGTCAGAAAAAGGTTGTTTATGTCTACCATCTCATTACCTCTGGGACAAGGGAAGAAGAGAAATACAGCCGACAAGTGGAAAAAGATCGGTTGTCTCAGTTAGTTTTTTCGTCTGAACAGAACAGTAATGACGTCAAAGTATCATCCAGAGATCTGGATGACAGAATTTTGGAAGCTGTACTTCAACATGAAAAGTTTAAAAAGATATTCCAAAAGATAATATACCAATCGAAGGAATCCTGCATGAATGAGAATTTTGGTTTGGCAGACAAGGAGTGA 3585 39.86 MVDYSLPVSKRTRLRRAMGGMEHFEQRRKRRKKSRSDSGSDNVRGKALSGKRVYDCEHSSVNRTLKVDCDDSDGDSLEVIDALTFGKEGGDSVTFVGSDSSGLKNVKEFYSKGLKKGNADLIDLENDVILLDEEEGFESVNSMCSVSKGKEGVEISPDKSVGGSDCLNSNGCESGGCSSKTEPTCCSDDAVDESTEFASSSEEEFDDSSDRNYELEESDGLNSESSSSEDEKSHGSYYAEIGDTRERKARRKKGNLLEGGLRRKAFGLDIFVDFDEDGHKKNDEVGEQVNCIARRTRSRFGFRARKINTNLGTVSQPFNVDEEESDFQCDEKEVGSSSRHDSGDSCDSDSTTGDEIYKPWGWSSSKKKTQFNNQSNDDDFLSEQKDDGFLSEKKDDDTNKVESFHVGSKIWNSRSSPETNNNRSKDFEKVCPENGHEFHDIVRTKGRDRPRGIDVFNILIDSIVADKELPSVELDLPTSQASQMPLPLKFGLMEPRLPEKSEEEKELDKLWAELDFALRSSEIGLVDCNSVEHEDAFPSKLEQVDLCLRGDHQLILDEQIGLKCRCCSYVKLEIRDIAPSFDTNPHGRSKKRNSGSFEHVKYDGLEQDADCDAHDGSDSRSHFGQTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELRERNGSNNGSGCIVSHAPGTGKTRLTINFLQTYMKLNPTCRPMIIAPSSMLLTWEEEFLKWDVGIPFHNLNKRDFSFEENMSALKFLMQASPSGQNVDNVRLVKLFSWKKEKSILGISYRLFERLAGVRNDSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFSNTLRLVRPNFAKESNTVGDECMDKKRGRPKNITRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKSFLERVQARKNSFEVEYVESLVSVHPSLILKCDKGDCEVDKDMLERCRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKLRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQVEKDRLSQLVFSSEQNSNDVKVSSRDLDDRILEAVLQHEKFKKIFQKIIYQSKESCMNENFGLADKE 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33161393 33166781 + PI0019119.1 Cmetu04g1824 354268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 225 243 - -
Cmetu04g1824 1194 Gene3D - 608 897 IPR038718 -
Cmetu04g1824 1194 Gene3D - 943 1187 IPR027417 -
Cmetu04g1824 1194 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 665 862 IPR014001 -
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 411 430 - -
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 196 243 - -
Cmetu04g1824 1194 SMART helicmild6 1033 1103 IPR001650 -
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 316 352 - -
Cmetu04g1824 1194 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 142 1182 IPR044567 GO:0080188
Cmetu04g1824 1194 Pfam Helicase conserved C-terminal domain 1004 1103 IPR001650 -
Cmetu04g1824 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 1142 IPR027417 -
Cmetu04g1824 1194 SMART ultradead3 634 888 IPR014001 -
Cmetu04g1824 1194 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 987 1148 IPR001650 -
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 1 53 - -
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 330 347 - -
Cmetu04g1824 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 869 IPR027417 -
Cmetu04g1824 1194 MobiDBLite consensus disorder prediction 196 213 - -
Cmetu04g1824 1194 CDD SF2_C_SNF 1001 1114 - -
Cmetu04g1824 1194 Pfam SNF2-related domain 667 959 IPR000330 GO:0005524|GO:0140658
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1824 K10875 - - csv:105435045 2131.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1824 Cmetu-Chr4:33161393 Cmetu06g1838 Cmetu-Chr6:9994029 2.10E-35 dispersed
Cmetu04g1824 Cmetu-Chr4:33161393 Cmetu10g1861 Cmetu-Chr10:13745342 1.70E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7780 PF00176 SNF2_N 1.10E-19 CL0023 Cmetu TR