Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1863 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGTTTGAGGGCCAACATCTCAAAGCCGCTGCTATAATCGGTAACGACGGTTCTGTTTGGGCTCAGAGCTCCGGTTTCCCTCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGATTGCACCTTGGTGGATCAAAGTACATGGTTATTCAGGGAGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGATTACTGTAAAGAAAACAACCCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCGGGACAGTGCAACGTGATTGTTGAGAAGTTGGGAGATTACCTTATTGATCAAGGCCTCTAA 396 45.2 MSWQSYIDDQLMYEFEGQHLKAAAIIGNDGSVWAQSSGFPQYKPEEISAIMKDFDEPGSLAPTGLHLGGSKYMVIQGESGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNVIVEKLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13021380 13023760 + PI0004449.1 Cmetu04g1863 354307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1863 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Cmetu04g1863 131 SMART prof_2 1 131 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Cmetu04g1863 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cmetu04g1863 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Cmetu04g1863 131 CDD PROF 2 130 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Cmetu04g1863 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Cmetu04g1863 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cmetu04g1863 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Cmetu04g1863 131 FunFam Profilin 1 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1863 K05759 - - csv:101218089 263.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1863 Cmetu-Chr4:13021380 Cmetu05g1709 Cmetu-Chr5:478227 1.90E-54 dispersed
Cmetu04g1863 Cmetu-Chr4:13021380 Cmetu05g1788 Cmetu-Chr5:475152 1.40E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g263 . . . . . . . . Cmo08g00707 Cmo17g00727 Cma01g00091 . Car01g00075 Car14g01139 Sed06g2183 Cpe12g00643 Cpe17g00524 Bhi01g03373 Tan04g2694 Cmetu04g1863 Lac11g0782 Hepe02g1450 . . Cla07g01272 Cam07g1227 Cec07g1455 Cco07g1416 Clacu07g1338 Cmu07g1316 Cre07g1699 . Cone17ag0127 . . Lsi02g02980 . Chy04g00956 . . . . . . . . . . Cmo01g00092 Cmo14g01321 Cma08g00743 Cma17g00758 Car08g00630 Car17g00703 Cpe02g01699 Cpe03g01090 Bhi09g00471 . . . . . . Cla09g00022 Cam09g0024 . Cco09g0025 . . . Lsi07g00531 Csa03g02348 . Cme04g01148
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.2e-212 734.9
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 2.9e-212 734.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT2G37620 95.8 3.5e-186 647.9
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.0e-214 740.7
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.6e-213 736.5
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 7.1e-211 729.9
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G59370 96.4 2.7e-186 648.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.8e-214 741.9
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.1e-214 741.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.4e-213 737.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 3.2e-211 731.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 1.2e-186 649.4
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.0e-214 740.7
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.4e-213 737.6
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.2e-212 734.9
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G12110 97.0 8.4e-188 653.3
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 5.1e-209 723.8
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.9e-208 721.8
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 9.6e-208 719.5
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G18780 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.7e-209 725.3
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.6e-209 723.4
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 3.3e-208 721.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.3e-208 720.7
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT1G49240 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.4e-214 741.5
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 6.4e-212 733.4
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 6.0e-186 647.1
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 8.3e-58 219.9
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.7e-56 214.9
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 9.5e-54 206.5
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 1.1e-57 219.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.6e-55 210.3
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29350 74.0 3.3e-54 208.0
Cmetu05g1709 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 1.3e-37 152.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 3.2e-65 244.6
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29340 70.9 4.4e-54 207.6
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 1.6e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112