Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1868 ATGAAATATGTTCCTTACTTTGATTCAAGGATGAAAATTGAGGCAAGTCCTGCCTTATCGATTCCGAATTCAAATGCAAGGCAGCATAAGAGTGCAGGGATAAATAAAGAAATATCTAAATCATTAAGAGTGTTGCTGCCTACTTCTTTGGAGGAGGTATATCCTAAGTTGCCAGATTCTCAACAGGTATCAATGGAACGAGAGCTGGTATCAAGGCCACTTGTTCATTCTAATCATATCCACTCAAGCAGTGGAGTGGTTGGCCATATATTTTCATCTTCTCCAGGGTTTTCAACAGATCTCCATTACTCGTCTGTTTCGTTGTATGAAAACCAATCTGATGCACCATTCATTCCTGAGTCATCAGCTAATGGTGCAATGTTGCATTCTCATTCAGAAATTCTTTCATCAACAAACCATCCTACTGCTGAAAATGCCAATTCGTGGTGTTCGGATGCACTGCCAGGTTTTCTGGAAGTTCCTGAAAATAACCCTGTTGGTAATAGTCGTGTAGAAAACAATAGTTGCAGTTCTCTTATGGTATCAGACGATTTTAGTAAAGAAAATGATTGGCAAGAATGGACGGATAGATTAATGACTGATGATTCATTGACTTCTAATTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATGGAGCACCAAGTATCTAAACCATCAATAAAAATGCAGGTGCAGCAATCTCAAGTTCAAAACCAGCTTTCTTCCTCTGGGGAAATTCCTATGATTGCTATCTCAACTCCTTCAAATGGAGCTCCCTCCAAGCCGCGAATGCGATGGACACCAGAACTTCATGATGCATTTGTAGAAGCTGTAAACAAACTTGGTGGTAGTGAAAGAGCAACGCCGAAGGGTGTTCTGAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGAACGGCTAGATACCAACCAGAATCATCGAAAGGATCAATTGATAAAAGCACTACCCCGCTTGAGGATATTTCATCTCTCGATCTCAAAACGAGTATTGATATCACAGAAGCCCTACGTCTACAGATGGAAGTTCAGAAAAGGTTACATGAACAACTCGAGATCCAACGAAATCTACAGTTACGAATAGAAGAACAAGGGAAATACCTTCAAATGATGTTTGAAAAACAATGCAAGTCAAGCAATAAACTGACAAAACCATCCACGTCCACTTTGGAGGATTCTCCATTCTCAGATTCAGTGCTGGAAACTTCCCAGGTGGAAAATCGCCCAGTCCACACCGGTCCATCTGAAGCTGACTCGATAGTCAGAAAGGCTACTGATGAAGTAGATGGGAAGTTAGATCCTCATAAAGACGCCCCAGAGAATCCGGAGCCTGATGTTTCTGAAGCTAGCGTCCAGCTATCCAAGCGCCAAAGGACAGAATGA 1446 41.7 MKYVPYFDSRMKIEASPALSIPNSNARQHKSAGINKEISKSLRVLLPTSLEEVYPKLPDSQQVSMERELVSRPLVHSNHIHSSSGVVGHIFSSSPGFSTDLHYSSVSLYENQSDAPFIPESSANGAMLHSHSEILSSTNHPTAENANSWCSDALPGFLEVPENNPVGNSRVENNSCSSLMVSDDFSKENDWQEWTDRLMTDDSLTSNWSDLLVDANVADLEPKMEHQVSKPSIKMQVQQSQVQNQLSSSGEIPMIAISTPSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGSIDKSTTPLEDISSLDLKTSIDITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSSNKLTKPSTSTLEDSPFSDSVLETSQVENRPVHTGPSEADSIVRKATDEVDGKLDPHKDAPENPEPDVSEASVQLSKRQRTE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21223118 21227659 - PI0021143.1 Cmetu04g1868 354312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1868 481 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 235 448 IPR044848 GO:0003700
Cmetu04g1868 481 Pfam Myb-like DNA-binding domain 269 320 IPR001005 -
Cmetu04g1868 481 Coils Coil 355 375 - -
Cmetu04g1868 481 Pfam MYB-CC type transfactor, LHEQLE motif 353 399 IPR025756 -
Cmetu04g1868 481 NCBIfam myb-like DNA-binding domain, SHAQKYF class 267 321 IPR006447 GO:0003677
Cmetu04g1868 481 MobiDBLite consensus disorder prediction 400 481 - -
Cmetu04g1868 481 FunFam Myb family transcription factor 266 324 - -
Cmetu04g1868 481 SUPERFAMILY Homeodomain-like 265 321 IPR009057 -
Cmetu04g1868 481 MobiDBLite consensus disorder prediction 400 431 - -
Cmetu04g1868 481 MobiDBLite consensus disorder prediction 441 464 - -
Cmetu04g1868 481 Gene3D - 266 325 - -
Cmetu04g1868 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 264 324 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1868 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0568 Cmetu-Chr2:12429748 Cmetu04g1868 Cmetu-Chr4:21223118 2.80E-59 dispersed
Cmetu04g1868 Cmetu-Chr4:21223118 Cmetu04g1972 Cmetu-Chr4:3259513 1.00E-28 dispersed
Cmetu04g1765 Cmetu-Chr4:16617439 Cmetu04g1868 Cmetu-Chr4:21223118 2.20E-22 wgd
Cmetu04g1868 Cmetu-Chr4:21223118 Cmetu06g1509 Cmetu-Chr6:11051163 2.60E-16 wgd
Cmetu04g1868 Cmetu-Chr4:21223118 Cmetu08g0377 Cmetu-Chr8:12690542 8.60E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004632 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7783 PF00249 Myb_DNA-binding 4.60E-09 CL0123 Cmetu TF